Phaeobacter bryozoorum: ACEQPH_02165
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Entry
ACEQPH_02165 CDS
T11316
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
pbrz Phaeobacter bryozoorum
Brite
KEGG Orthology (KO) [BR:
pbrz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbrz03032
]
ACEQPH_02165 (gyrB)
03400 DNA repair and recombination proteins [BR:
pbrz03400
]
ACEQPH_02165 (gyrB)
Enzymes [BR:
pbrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
ACEQPH_02165 (gyrB)
DNA replication proteins [BR:
pbrz03032
]
Prokaryotic type
DNA Topoisomerases
ACEQPH_02165 (gyrB)
DNA repair and recombination proteins [BR:
pbrz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ACEQPH_02165 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
HATPase_c
Toprim
GyrB_hook
GyrB_insert
Toprim_4
HATPase_c_3
DUF1690
Motif
Other DBs
NCBI-ProteinID:
XGI94735
LinkDB
All DBs
Position
448847..451264
Genome browser
AA seq
805 aa
AA seq
DB search
MSGNEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG
HADRVVVKIHADSSVSVHDNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG
LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTAEHLKVVGDCGDQTGTEVRFLAST
DTFSNLEYSFETLEKRLRELAFLNSGVRIVLIDERPAERLEVELFYEGGVKEFVKYLDRS
KSPVMEAPIYITGDRDDIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT
INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL
VNEKLAEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE
KDPAKSEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVM
ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP
PLYKVSRGKSEVYLKDQAALDEYLINQGVDGAVLKLGSGEELVGQDLARVVDEARQLKRV
LDAFPTHYPRHILEQAAVAGAFVPGAVDADLQGVADKVAQRLDLIALEYERGWRGRITQD
NGIRLSRILRGVEELRTLDGPMLRSGEARKTGSFTNSLQEIYGSTATLVRRDRSQAIHGP
LGLLKAILDEGEKGLALQRYKGLGEMNPDQLWETTLDPDARTLLQVRVEDMVEADDLFTK
LMGDVVEPRREFIQKNALSVENLDF
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaacgagcaggcccccgcagaatatggcgcggattccatcaaggttctcaaa
gggttggaggcggttcgcaaacgtcccggcatgtatatcggggacaccgatgatggctct
gggttgcaccatatggtgtatgaggtcgtcgacaacggcatcgatgaagccctggccggt
cacgcggaccgggtggttgtgaaaattcacgccgattccagtgtttcggtgcacgacaac
gggcgcggtatcccggtcgatattcatgccgaggaaggcgtctcagccgctgaagtcatc
atgacgcagctacatgccggtggtaagtttgacagcaactcctacaaggtgtctggcggc
ttgcacggtgtgggcgtgtctgtggtgaatgcgctctccgattggctggagctgcgtatc
tggcgcaacggcaaggagcatgtcgcccggtttgagcggggcgataccgcggaacatctt
aaggtggtcggcgactgcggggatcagaccgggaccgaggtccgttttctggcctcgaca
gataccttctccaacctggaatactcctttgaaacgctggaaaagcgcctgcgcgaactg
gccttcttgaactctggtgtgcggatcgtcctgattgacgagcgtccggccgaacggctg
gaagtggagctgttctatgaggggggcgtcaaggaattcgtcaaatatctcgatcggtca
aaatcccctgtcatggaggcgccgatctatatcaccggtgaccgggatgatatcggggtc
gaggtcgccatgtggtggaacgacagctaccacgaaaccgtgctgccgtttaccaacaac
attccacagcgcgatggtgggacccatgttgcgggtttccgtggcgccttgacccggacc
atcaacaactatgcgcagtcgtccggcatcgccaagaaggaaaaggtctcctttaccggc
gatgatgcccgcgaagggctgacctgcgtcttatcggtcaaggtgccggatccgaaattc
tccagccagaccaaggacaagctggtctcctcagaagtgcggcccgtggttgaaagcctc
gtcaatgagaagcttgccgaatggttcgaagaaaacccaaatcaggccaagcagatcgtc
ggcaagatcatcgaagccgccctcgcgcgggaggctgcccgaaaggcccgtgaactgaca
cgccgcaagaccgcgatggatgtcaattatcttgcaggcaagctcaaggactgctcagag
aaagatcctgccaaaagcgaagtcttcctggtcgagggtgactcggcaggcggttccgcc
cagaccggccgggaccggatgacacaggccattctgcccctccgcggcaagattctgaac
gtcgaacgcgcacggtttgaccggatgctgggcagtcaggaaatcggcaacctcgttatg
gcgcttggtaccggcatcgggcgcgatgaattcaacatcgagaaactgcgttaccataag
atcgtcatcatgacggatgctgacgttgacggcgcccacatccgcacgctgctgctcacc
ttcttctatcgtcagatgcccgagttgatcgagggcgggtatctctatatcgcccaaccg
ccgctctataaggtgtcgcgcggcaaatccgaggtctatctcaaggatcaggctgcgctg
gatgaatatctgatcaatcagggtgtcgacggcgcggttctgaaactgggcagcggcgag
gagctggtgggtcaggatctggcccgtgtggttgatgaggcgcgccagctgaagcgcgtt
ctggatgctttcccgacgcattatccgcgccatatccttgagcaggcggcagtcgccggt
gcctttgtacccggcgccgttgatgctgatcttcagggagtcgccgacaaggttgcgcag
cgtcttgacctgattgcgctggaatatgaacgcggctggcgtggtcgtatcactcaggat
aacggtattcgcttgtcgcgtatcctgcgcggcgtcgaagagctcaggacactggacggt
ccgatgctgcgctctggtgaggcacggaaaacagggagctttaccaacagcctgcaagag
atctacggctcaactgccacgcttgtgcggcgtgaccgcagccaggccatccacggcccg
ctcggtctgctgaaggcgatcctcgatgagggtgaaaaaggtctggcgctacagcgttac
aaaggcctgggagaaatgaacccggatcagctgtgggaaaccacgctggaccccgacgcg
cgcaccctgttgcaggtgcgggttgaggatatggtcgaagcggatgatctctttaccaag
ctgatgggcgacgtcgtggaacctcgccgcgaatttatccagaaaaacgcgctcagcgtg
gaaaacctggatttctga
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