Rubinisphaera brasiliensis: Plabr_1075
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Entry
Plabr_1075 CDS
T01431
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase; Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pbs
Rubinisphaera brasiliensis
Pathway
pbs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Plabr_1075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbs03400
]
Plabr_1075
Enzymes [BR:
pbs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Plabr_1075
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Plabr_1075
DNA repair and recombination proteins [BR:
pbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Plabr_1075
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_IS1595
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
ADY58693
UniProt:
F0SK04
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All DBs
Position
complement(1262454..1263293)
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AA seq
279 aa
AA seq
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MPELPEVETMVRGIRQAVAGTRLAAVDLCPCPRKPITLTPGIEELRDRTVGQTITAVERR
AKRVVLRLESEDCYVIEPRMTGLMLLADPPTIDHLRIHWQLRDGRKRRSLWFWDRRGLGT
VRLYSPTEYEAALGLQKLGPDALDMTPALWKDALQRTARPIKVALLDQKLVAGIGNLYAS
EILHAIRLSPETPANTLTAGQIRKLHRSCLAILELAIQYEGSTLGDGTYRNALNKDGSYQ
NEHRVYGKTGETCPRCQKHSIERIVQAQRSTFYCPRCQK
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgccagaacttccggaagttgaaacaatggttcgcggaatccgtcaggcggtcgccgga
acccgcctggcggctgtcgatttgtgcccttgtccgcgaaaaccgatcaccctcaccccc
gggattgaggaattgcgggatcgaacggtcggacagaccatcactgcggtcgaacgacgc
gcgaagcgagtcgttttaaggttagaatctgaagactgttacgtcatcgaaccccgcatg
accggcctgatgctgctcgccgatcctcccacaatcgaccatctccgcattcactggcaa
ttgcgggacggccggaaacgccgctcgctgtggttctgggaccggcgtggtctggggaca
gtccggctgtactctcccacggaatacgaagccgccctcggtttgcagaagctcgggccg
gatgcgctcgatatgacccccgcgctgtggaaagacgcgttgcaacgaaccgcccggccc
atcaaagtggctctgctcgaccagaaactcgtggcgggcatcggcaatttgtacgccagc
gaaattctgcacgcgatacgtctttcgccggaaacgcccgccaacacgctgaccgccggg
caaatccgcaagctgcatcgcagctgcctggcaattctcgaattggccattcagtacgaa
ggatcgactctgggagacggcacctaccggaatgctctaaataaggacggcagctaccag
aacgaacaccgcgtttacggcaaaacgggcgaaacctgccctcgctgccagaaacattcc
atcgaacgcatcgttcaggcacaacgatccaccttttattgcccccgctgccagaagtga
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