Rubinisphaera brasiliensis: Plabr_3447
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Entry
Plabr_3447 CDS
T01431
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pbs
Rubinisphaera brasiliensis
Brite
KEGG Orthology (KO) [BR:
pbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbs03032
]
Plabr_3447
03400 DNA repair and recombination proteins [BR:
pbs03400
]
Plabr_3447
Enzymes [BR:
pbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Plabr_3447
DNA replication proteins [BR:
pbs03032
]
Prokaryotic type
DNA Topoisomerases
Plabr_3447
DNA repair and recombination proteins [BR:
pbs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Plabr_3447
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ADY61044
UniProt:
F0SN15
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Position
complement(4243025..4245667)
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AA seq
880 aa
AA seq
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MVAKNDKYKALVIVESPLKAKKIGEFLGKDYVVRASLGHVRDLPSKASEIPAAVKKESWS
TLGVNTSEKFEPLYVVPPDKKKLIKELKDLLKDSSELIIATDEDREGESIGWHLVQLLKP
KVTVRRMVFSEITKTAIQEAIRNTREINEELVEAQETRRVLDRLYGYTLSPLLWKKIARG
LSAGRVQSVAVRLLVRRELERIAFRSGTYWDLKAELKATEGNPFEAVLSTLGGKRLASGK
DFDETTGRLKDGSDVLLLGQDEAERLQAQLLESPWKVSDIEERMSNRKPPAPFITSTLQQ
EANRKLGMSARQTMQTAQRLYENGHITYMRTDSVTLSNEAVQAARGRIEDLYGGDYLSPS
PRQYASKSKNAQEAHEAIRPSGTEMKTPEELNLSGPEFKLYSLIWKRTMASQMAEARLKF
LNVTIAVGEAEFKATGRQVVFPGFFRAYVEGSDDPEAALDDRDAMLPPLSQEESLDCKQL
DPVAHETKPPARYTEASLVRMLESEGIGRPSTYASILSTIQDRGYVRKDGNQLTPTFTAM
AVTRLLEDNFPNLVDTQFTAGMEQTLDDISNGQAERLPYLDRFYSGSDGLETQVKSREEQ
IDPRKACTLELSGLQSNVRVGRYGPYLEKDNDGEPMTASLPQEISPADVNNEMAEKLFEL
KAKGPESIGMHPEEGLPIFVLSGPFGPYLQLGEQQEDGPKPKRVSIPKNYDPTKVDLDLA
VKLMELPRTVGQHPEDGKVVKAGIGRFGPYVQHDGKYKSLGKDNDVLTVGLEEAVELLKQ
ARTKQAPKPLREIGKHPEDESVIAVFEGRYGPYIKFGKLNVTVPKDTDIHSITVEEAVQW
IDEKAAKKGVKKKSAKKKAAKKSTKKKAAKKKATKKKAAE
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggtcgccaagaacgacaaatataaggcgttggtcatcgtcgaatcgccgttgaaggcg
aaaaagattggcgagttcctgggaaaagactacgttgtccgagccagcctggggcatgtg
cgcgatctgccatccaaagcctccgaaattccagcggccgtgaaaaaggaaagctggtcg
acgctgggcgtgaacacgagcgaaaagttcgaaccgctctacgtggttccgccggacaag
aagaagctcatcaaagagctcaaagatttgctgaaggattccagcgaactcattatcgcg
accgatgaagaccgcgaaggggaaagcatcggctggcatctggtgcagttgctcaagccg
aaggtaaccgtccgccgcatggtcttctcggagatcacgaaaacggccattcaggaagcg
attcgcaatacccgcgaaattaacgaagagctggtcgaagcacaggaaacccgtcgcgta
ctcgaccgactctacggctacacactcagtccgctgttgtggaagaagatcgcccgtggt
ctctctgccggccgtgtgcaatcggtcgccgtccgtttgcttgtccgccgtgaactggag
cgaatcgccttccgttccggtacctattgggacttgaaagccgaactgaaagcgaccgaa
ggaaatccgtttgaagcggtcctctcgacactgggcgggaaacggctcgcttcggggaaa
gacttcgatgaaacgaccggccgattgaaagacggttccgatgtgctcctgctcggtcag
gatgaggcggaacggctgcaggctcagctgctcgagtctccgtggaaagtgtcggatatc
gaagagcggatgagcaatcgcaagccgcccgctccgttcatcaccagtacgctgcagcag
gaagcgaaccgaaaactcggcatgagtgcccggcaaaccatgcagactgctcagcgactg
tatgaaaacggtcacatcacttacatgcgtaccgatagcgtcacgctttccaatgaagcg
gtccaagcggcgcgaggtcgaattgaagacctctacggtggagactatttaagcccgtca
ccacgacaatacgcgagtaaatcgaagaacgcccaggaggcacacgaagcgattcgtcct
tccggtacggaaatgaaaacgccggaagagctgaatctgtcggggccggagttcaagctt
tacagcctgatctggaaacgaacaatggcttcgcagatggcggaagcccggctgaaattc
ctgaacgttaccattgccgtcggcgaagccgagttcaaagcaacagggcgtcaggtcgtc
ttcccaggtttcttccgcgcttacgtggaaggttccgacgatccggaagcggcactcgac
gatcgcgatgcaatgctgcctccgttgtcacaggaagaatcgctcgactgtaaacagctc
gatcccgtcgctcacgaaaccaagccgccagcccggtataccgaggcgtcgctggtgaga
atgctcgaaagcgaagggatcggccggccgagtacctacgccagcattctgagcacgatt
caggatcgcggttacgtccgcaaagatggcaaccagctgactccgacattcactgcaatg
gcggtaacgcgattgctcgaagacaacttcccgaatctggttgacacccagttcacggcg
gggatggagcagactctcgacgatatttccaacggtcaggccgaacgtcttccctacctc
gatcgcttctacagtggatcggacgggctggaaacgcaggtcaaaagccgtgaagaacag
atcgatccgcgtaaagcctgtactctcgagttgagtgggctgcagtcgaatgttcgcgtc
ggacgctacggcccttatctcgaaaaagacaacgatggcgagccgatgaccgcttcgctg
ccgcaggaaatttcgcccgcggatgtcaataacgagatggcggagaaactgttcgagctg
aaggcaaagggcccggaatcgatcggcatgcaccctgaagaaggactgccgattttcgtc
ctttccggaccgttcggcccttatctgcagttgggtgaacaacaggaagatggtccgaag
ccgaaacgtgtttccatccccaagaactacgaccccaccaaagtggacctggatctggcg
gtcaagttgatggaacttccccggaccgttggtcagcacccggaagacggaaaggttgtg
aaggcgggcattggtcgcttcggcccgtatgtgcagcacgacggtaaatacaagtcgctt
gggaaagacaacgacgtcttgaccgttggtctggaagaagcggttgagttgctgaagcag
gctcgcacgaagcaggctcccaagccattgcgggaaattggtaagcatcccgaagacgaa
tcggtcattgcagtctttgaagggcgttatggcccgtacatcaaattcggcaagctgaac
gtgaccgtgccgaaagacaccgatattcattccatcacggtggaagaagcggtgcagtgg
attgacgaaaaggcggcgaagaagggcgtgaagaaaaaatccgccaagaagaaagcagcg
aaaaagtcgacgaagaaaaaggcggcgaaaaagaaagccaccaagaagaaagcggctgag
taa
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