Rubinisphaera brasiliensis: Plabr_3978
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Entry
Plabr_3978 CDS
T01431
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pbs
Rubinisphaera brasiliensis
Pathway
pbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Plabr_3978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbs03019
]
Plabr_3978
03110 Chaperones and folding catalysts [BR:
pbs03110
]
Plabr_3978
03029 Mitochondrial biogenesis [BR:
pbs03029
]
Plabr_3978
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pbs04147
]
Plabr_3978
Enzymes [BR:
pbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Plabr_3978
Messenger RNA biogenesis [BR:
pbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Plabr_3978
Chaperones and folding catalysts [BR:
pbs03110
]
Heat shock proteins
HSP60 / Chaperonin
Plabr_3978
Mitochondrial biogenesis [BR:
pbs03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Plabr_3978
Exosome [BR:
pbs04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Plabr_3978
Exosomal proteins of other body fluids (saliva and urine)
Plabr_3978
Exosomal proteins of breast cancer cells
Plabr_3978
Exosomal proteins of colorectal cancer cells
Plabr_3978
Exosomal proteins of bladder cancer cells
Plabr_3978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
divDNAB
Motif
Other DBs
NCBI-ProteinID:
ADY61555
UniProt:
F0SFU8
LinkDB
All DBs
Position
complement(4909937..4911550)
Genome browser
AA seq
537 aa
AA seq
DB search
MAKQMLFSDGARIKLQKGVRTLADAVAVTMGPTGRNVIIDKSFGNPVVTKDGVTVSKEVD
LNDPYENMGAKLVNEVASKTSDIAGDGTTTATVLARSIFEEGLRSISLGANPTVVRRGIE
KAVAAAIKKLESMAKPVSEKSEIASVGAISANNDDEIGKLIADAMEKVGRDGVITVEEGK
GNETTLELAEGMQFDKGYISPYFVNQPESMSCEFDDALILLFEKKISTLRDIVPILEKVS
QTGKPLLIICEDIEGEPLTALVVNKLRGILNVCAVKAPGFGDRRKAMLGDIAVLTGGTLI
SEDLGLKLENIDVSHLGQARRLEITKDSCTIIEGAGDSKDIQARVDQIRSHIEQTDSDYD
REKFQERLAKITGGVAIISVGAATEAEMKQTKARMEDALHATRAAVEEGILPGGGTALLR
CVDAVDKVEASGDERIGVEIIKRALQAPIRQIAENCGVDGAVIADEVKDLKMNEGYDAKR
GEYGNMVEKGIIDPAKVVKTALTNAASISGLMLTTQVLVTKTDDEGKSNKPVEGAVR
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
gtggccaagcaaatgctgttttcggacggggcccggatcaaactgcagaaaggtgtgcgg
actttggccgacgctgttgcagtgacgatgggaccgaccggccgcaatgtcattattgat
aaaagcttcggtaatcccgttgtgaccaaagacggtgtgaccgtcagtaaggaagtcgac
ctgaacgacccttacgaaaacatgggcgccaaactggttaacgaagtggcttccaaaacc
agcgacatcgccggtgacggaaccacgaccgcaaccgtgctcgctcgttctattttcgaa
gaaggcctgcgaagcatctctctgggagccaatcctacggttgtgcgtcgcggaatcgaa
aaagcggttgccgccgccatcaaaaagctggagagcatggccaagccagtttctgagaaa
tcagaaatcgcgagcgtcggtgccatctctgccaacaacgacgacgaaatcggcaagctg
atcgccgatgccatggaaaaagtcggtcgtgatggcgtgatcaccgtggaagaaggcaaa
ggaaatgaaaccaccctcgaactcgccgaaggtatgcagttcgacaaaggctacatttct
ccttacttcgtcaaccagccggaatctatgtcctgcgagttcgacgacgctttgatcctg
ctgttcgagaaaaaaatctcgacgctgcgggacatcgtgccgattctcgagaaggtctct
cagaccggtaagccgctgctgattatctgcgaagatatcgaaggcgagccgctgaccgct
ctggttgtgaacaaacttcgcggcattctcaatgtctgtgcggtgaaagctcctggcttc
ggcgatcgccggaaagccatgctgggcgatattgctgtgctgaccggcggaacgctgatt
tcagaagacctcggcctgaaactcgaaaacatcgacgtcagccacctgggtcaggctcgc
cgtctggaaatcaccaaagattcctgcaccatcatcgaaggagcaggcgattctaaggac
atccaggctcgcgtcgatcagatccgtagtcacatcgagcagactgacagcgactacgat
cgtgagaagttccaggaacgtctcgccaaaatcaccggcggcgtggccatcatttctgtc
ggtgcagccaccgaagcagaaatgaagcagaccaaagcccgcatggaagacgctctgcac
gccactcgtgccgctgtcgaagaaggcatcctgcccggcggtggaactgcactgctgcgt
tgcgtggacgctgtcgacaaagtcgaagccagtggcgatgagcggatcggcgttgagatc
atcaagcgggctctgcaggccccgattcgtcagattgccgaaaactgcggcgtcgacgga
gctgtgatcgccgacgaggtcaaagacctgaaaatgaacgaaggctacgacgccaagcgt
ggcgagtacggcaacatggtcgaaaaaggcattatcgacccagccaaagtggttaaaacc
gctctcaccaacgctgcttctatctctggtctgatgctcaccacccaggttctcgtcacc
aaaaccgacgacgaagggaaaagcaacaagccggttgagggcgctgttcgctag
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