Fermentimonas caenicola: ING2E5B_0405
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Entry
ING2E5B_0405 CDS
T03818
Name
(GenBank) dead/deah box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbt
Fermentimonas caenicola
Pathway
pbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ING2E5B_0405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbt03019
]
ING2E5B_0405
Enzymes [BR:
pbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ING2E5B_0405
Messenger RNA biogenesis [BR:
pbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ING2E5B_0405
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ERCC3_RAD25_C
Cas3-like_C_2
KH_PARP14_6
AAA_7
AAA_19
Motif
Other DBs
NCBI-ProteinID:
CEA15174
UniProt:
A0A098BWX7
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All DBs
Position
chrI:complement(442250..444025)
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AA seq
591 aa
AA seq
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MLFTELPLTDSLLEGLDAMNFKETTPIQEQAIPILLKKKDVIACAQTGTGKTAAFLLPLL
NNLQTDDHDQNKVNAIIMAPTRELAQQIDQMMEGFSYYTPFSSVAVYGGNDGEAWDVQKK
GLLNGADVVISTPGRLLSHINLYNIDFSGVKYFILDEADRMLDMGFYDDIMKIVKLLPKD
RQTVMFSATMPPKIQQMAKTILRNPEEITISVAKPPESIIQSSYICYESQKMEILKLLFK
NKKPHKVILFSGKKQKVKEIAKTLQKMDLSVGEMHSDLDQSQREHVMREFKNERIDILVA
TDIVSRGIDIDDITLVINFDVPYDVEDYVHRIGRTARAGDSGMAITFVSPEDQHLFEKIE
QFLQKKIYRIPVPSELGETPEYNPEEFRKQKGTKRNSSKRRSSTKPGGNDKREKVEKSAR
SGNKQRKGYKNRTIKGSKEESVNNVTKENENLKNDLSNKENSNNNQNRKRNNRNNRKRKP
VQENTQQNFNPAQGKVKSNKQDSNDTTPAKSTNKRLVKKKDLNRSDISAAETGNKGVSAE
VKSGKGKDTGSRKMKAVAKKQDSAKVKNESVKQQEKTAKKKWWSWWPFGSK
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgctatttaccgaacttcccttaacagattctcttttagaaggattggatgcaatgaat
tttaaagaaactactcctattcaggaacaggcaattcctatcctgctcaagaaaaaggat
gttatagcctgtgcacaaacaggaacgggcaagactgctgcatttttgcttccactttta
aataatctgcaaacagatgatcatgatcaaaataaggtaaatgcaattattatggctcca
acgagagagctggctcaacagatcgaccagatgatggaaggtttttcttattatactcca
ttttcttcggttgcggtttatggtggtaatgatggtgaggcatgggatgttcagaaaaaa
ggacttttaaatggggcagatgtggtgatttcaactccgggaaggttattatcacacata
aatctttataatatcgatttctcaggagttaaatatttcatccttgatgaggctgacagg
atgctggatatgggattctatgatgatatcatgaagatagtgaagctgcttccaaaagat
aggcagactgtaatgttttcagcaaccatgccacctaaaatccaacagatggcaaaaaca
attcttagaaatcctgaagagataactatatctgtagcaaaaccacctgaatcaattatt
cagtcgtcttacatctgttatgagtcacagaaaatggagattcttaaactccttttcaaa
aataaaaagcctcacaaggttatacttttctctggaaaaaaacagaaggtaaaagagatt
gctaaaacacttcagaagatggacctttctgtaggtgagatgcattccgatctggatcag
tcacagcgtgagcatgtcatgcgtgagtttaaaaatgaaagaattgatattttagtagcc
actgatattgtttcacgaggcattgatattgatgatattacccttgtaataaattttgat
gtaccttacgatgtggaggattatgtgcatagaatagggagaactgcacgtgcaggtgat
tcaggaatggcaataacttttgtttcaccggaggatcagcatctgtttgagaagatagaa
cagttccttcagaaaaagatatatagaatacctgtaccaagtgaacttggtgaaacacct
gaatataatcctgaagagttcagaaaacaaaaaggtacaaagagaaattcatcaaagaga
aggtcttcaactaaaccgggtggtaatgataaaagagaaaaagtggagaaatctgcaaga
tccgggaataaacagcgtaaagggtataagaatcgtacaattaagggttctaaagaagag
tctgtaaataatgtgacaaaagagaacgagaatctaaaaaacgacctgagtaataaagag
aacagcaacaataatcagaatagaaaaaggaataatcgtaataatagaaaaagaaaaccg
gttcaagaaaatactcaacagaattttaatcctgctcagggtaaggttaaatcaaataag
caggattcaaatgatacaacccctgctaaatcaacaaacaaaaggttggtaaagaaaaaa
gatcttaacagatcggatatatctgccgcagaaaccggtaataaaggagtatcagctgaa
gtaaaatcaggtaaaggaaaagatactggctcacgaaagatgaaagctgttgcgaaaaaa
caggactctgctaaagttaaaaatgaatcggtaaaacagcaggagaaaacggctaaaaag
aagtggtggagttggtggccattcggctctaaataa
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