Fermentimonas caenicola: ING2E5B_1181
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Entry
ING2E5B_1181 CDS
T03818
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pbt
Fermentimonas caenicola
Pathway
pbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ING2E5B_1181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbt03021
]
ING2E5B_1181
03019 Messenger RNA biogenesis [BR:
pbt03019
]
ING2E5B_1181
Transcription machinery [BR:
pbt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ING2E5B_1181
Messenger RNA biogenesis [BR:
pbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ING2E5B_1181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
Spore_III_AA
OB_RNB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CEA15933
UniProt:
A0A098C0J2
LinkDB
All DBs
Position
chrI:1292924..1294882
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AA seq
652 aa
AA seq
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MAYNIIELNEKLTTELRVLAKEMGIRRPDAYKKEELIYKILDEQAIAETKKLTSDSGSRQ
GNKGRNASDNNTKNQKNRDNKSESKSASVKKVESKKTEPEKSETNNKDLIKSQNQSNNVS
VQTEKKDNQQSVKNTPSKNISQSPNKAVEKVAEKSTPEIIKNTTANSQDKKENVKEIKDD
SVQKPTGRPIQLVFRSSKHRNEEKKSAPAPVTLPPVVAEDPEAESEKAASAAIPPVEKMS
ILDLITPSPIQSKPQQQNQQTKSQLTTQPQKQKEKEPSYDFDGILTASGVLEIMSDGYGF
LRSSDYNYMSSPDDIYVSQSQIRLFGLNTGDVVEGPIRPPKEGEKFFPLVKVDRLNGRNP
DAVRDRVPFDHLKPLFPDEKFNLTKGHNDNLSCRVVDMFTPIGKGQRGLIVAQPKTGKTV
LLKDIANAIADNHPEVYMIILLIDERPEEVTDMERSVNAEVIASTFDEPADHHVKIAEIV
LNKARRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALHKPKRFFGAARN
IENGGSLTIIATALTDTGSKMDDVIFEEFKGTGNMELQLDRKLSNKRIFPSVDIIASSTR
RDDLLLSEETLNRMWVLRNFLSDMNSVEAMEFLLNRLRRTSNNEEFLISMND
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcttataacattattgagcttaatgaaaagcttacaacagaattacgggtccttgca
aaagagatgggaataagacgccctgatgcatataaaaaagaggagctaatctataaaatt
cttgatgagcaagcaattgctgaaactaaaaaactaacctctgacagtggttccagacaa
ggtaataaaggaagaaatgcttctgacaataatacaaagaaccaaaaaaacagagataat
aaatctgaatcaaaatcagcttcagtaaaaaaagtagagtcaaaaaaaactgaacctgaa
aaatctgaaactaacaacaaggatctgattaaaagtcaaaatcagtcaaataatgtttct
gttcaaactgaaaagaaagataaccagcagagtgtaaaaaacacaccgtcaaaaaatata
tctcaatctccaaataaagcggtagaaaaagtggcagaaaaatcaacacctgaaatcatt
aaaaacacaactgccaatagccaggataaaaaggagaatgtgaaggaaattaaggatgac
tctgtacaaaaaccaactggaaggccaattcagctggtatttagatcatctaaacatcgt
aatgaagaaaagaagagtgctcctgctccagtaacattgccacctgttgtagcagaggac
cccgaggctgaatcagaaaaagcagcaagtgctgcaatcccaccagttgaaaagatgtca
attctggatcttataacaccatccccaattcagtctaaacctcagcaacaaaatcaacag
acaaagtctcaattaactactcaaccacagaaacagaaagaaaaagaaccatcttatgat
tttgatggaattttaactgcttctggcgttcttgaaattatgtctgacggttatggattt
ttacgttcatctgattacaactatatgtcatcaccagatgatatatatgtctctcagtcg
cagatcagactgtttgggcttaacacaggggatgttgtagagggaccaattcgccctcca
aaggaaggtgaaaagttttttccactggttaaagtagatcgactaaatggacgcaaccct
gatgctgtacgtgaccgcgttccgtttgatcatttgaaaccattatttccggatgagaaa
ttcaatttaacaaaaggtcataatgacaatctttcatgcagggtggttgatatgtttacg
ccgataggtaaaggtcagcgtggattaattgtggcacagcctaaaactggtaaaacagtt
cttctgaaagatattgccaatgcaattgctgacaatcatcctgaagtgtatatgattata
ctgctaattgatgaaagacctgaagaggtaactgatatggagcgtagcgttaatgctgaa
gttattgcgtctacctttgatgagcctgcagaccatcacgtaaaaattgctgaaatagta
cttaacaaagcaagacgattagttgaatgtggtcatgatgtggtaattctgttagactct
atcactcgtctagcaagagcatataatacagttcaaccggcatcaggtaaagtactttca
ggaggtgttgatgcaaatgcattgcacaaacctaaacgcttctttggagcagcaagaaat
attgaaaatggtggttcactaactataattgctactgctcttaccgatacaggttctaaa
atggatgatgtaatattcgaagagtttaaaggtacaggtaacatggaacttcagcttgat
agaaaattatccaacaagagaatttttccttctgtggatattatagcttcaagtacacgt
cgtgatgacctgctactatcagaagaaactcttaatcgtatgtgggtattacgtaacttc
ctttctgatatgaactctgttgaagcaatggaattcttacttaatagattaagacgtaca
tctaacaatgaagaatttttaatctcaatgaatgattga
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