Fermentimonas caenicola: ING2E5B_1814
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Entry
ING2E5B_1814 CDS
T03818
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pbt
Fermentimonas caenicola
Pathway
pbt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ING2E5B_1814 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbt03021
]
ING2E5B_1814 (rpoC)
03400 DNA repair and recombination proteins [BR:
pbt03400
]
ING2E5B_1814 (rpoC)
Enzymes [BR:
pbt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ING2E5B_1814 (rpoC)
Transcription machinery [BR:
pbt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ING2E5B_1814 (rpoC)
DNA repair and recombination proteins [BR:
pbt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ING2E5B_1814 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CEA16553
UniProt:
A0A098C2C3
LinkDB
All DBs
Position
chrI:2035645..2039931
Genome browser
AA seq
1428 aa
AA seq
DB search
MAYRKENKIKSNFSKITISLASPEKVLENSYGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERTGHIHLVVPVAHIWYFRSLPNKI
GYLLGIPTKKLDTIIYYERYVVIQPGILEDKLSEKDLLTEDEYLEYLDSIPKENQLLEDS
DPNKFIAKMGAEALLSLLERINLDKLANQLRHKANTETSQQRKNEALKQLQVVEAFRGSK
NINKPEWMIMKVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIKAPD
VILRNEKRMLQESVDSLFDNSRKSSAIKTESNRPLKSLSDSLKGKQGRFRQNLLGKRVDY
SARSVIVVGPELKMHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVVY
DILEYVMKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFNADFDGDQMAVH
LPLGNEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYITKIRPGAKGEGMIFYG
EEEAIIAYNEGAVDIHALVKVIVDDIDEEGNPIRKMHETTVGRVITNEAIPKEVGYVNEL
LSKKSLRDIIGKVIKTCGVARTAQYLDDIKDLGYKMAFKGGLSFNLEDVIIPKEKESLIQ
QGYDEVEQILENYNMGFITYNERYNQIIDTWTHINSKLSNILMKQLSEDDQGFNSIYMML
DSGARGSREQIRQLSGMRGLMAKPQKSGAEGSQIIENPILANFKEGLSVLEYFISTHGAR
KGLADTALKTADAGYLTRRLVDVSQDVIVNEVDCGTLRGLTATAIKNNEEVIASLYERIL
GRVSVHDVQHPNTGEIIVNSGEEITEEIAKKIEESPIERVEIRSVLTCESSHGVCAKCYG
RNLATGHMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGIASNIAAESRIIAKYDGIVEF
EELRFVETTDSEGKPYKVVVSRLMEMRIIDPNTKIVLLSHNVPYGSKLYFNQGDKIKKGD
LICEWDPFNAVIVSEASGRIRFENFTENLTYKVESDEQTGLKEKVIIESRDKTKAPSAHI
VDENDDILRTYTLPLGSHIVKNENDVIKAGDTLVKIPRAVGKSGDITGGLPRVTELFEAR
NPSNPAVVTEIDGEVSFGKIKRGNQEISVTSKTGEVKKYLVPLSKQILVQENDYIRAGMP
LSEGAITPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEVIVRQMMRKVEVVDP
GDTRFLEQQLVDKLEIMEENDRTWGKKVITDAGDSQIFEPGQIVTVRKLRDENSSLKRRD
LKLVEARDAVPATANQVLQGITRAALQTTSFMSAASFQETTKVLNDAAIHGKVDTLDGLK
ENVIVGHLIPAGTGQREFDKLVVGSREDFEKINANKRSNLFQEAISQE
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggcatatagaaaagagaataaaataaagagtaacttttcaaaaattacgatcagtctg
gcttcaccggaaaaagttcttgaaaactcttatggcgaagtattaaagccggaaacaatt
aactaccgtacatacaaacctgaacgtgacggattattttgcgaacgtatattcggtcca
gtaaaagattacgaatgtcactgcggaaaatataaaagaattcgttataagggtatcgtg
tgtgatcgttgcggtgtagaagttacagaaaaaaaggtgcgtcgcgaacgtacgggacat
atccatctggtagttcctgttgctcatatatggtattttagatcattacctaataaaata
ggttatctgttaggtataccaacaaaaaaactggatacaattatttattacgaaagatat
gtcgtaatccagcctggtattcttgaggacaaattgtcggaaaaagatcttttgacagaa
gatgaatatcttgaatatctggactcaattccaaaggagaatcaacttctagaagattcc
gatccaaataaatttattgctaagatgggtgcagaagcactgttgagcctgcttgaaaga
ataaatcttgacaaactggcaaatcaactgcgtcacaaagcaaatactgaaacttctcag
caacgtaagaatgaagcacttaagcaactacaggtagtagaggccttccgtggttcaaaa
aatattaataagcctgagtggatgataatgaaggtaattcctgttattccacccgatctc
aggccactggttcctcttgatggaggaagatttgccacatcagacttgaatgacctttat
cgcagggttatcatacgtaataatcgtctgaaaaggttgatcgatattaaggctcctgat
gtgatcctcagaaatgagaaacgtatgcttcaggaatcggtagattcattatttgacaac
tctcgtaaatcgagtgcaattaaaactgaatcaaaccgtccgttgaaatctctatctgac
agtttaaaaggaaaacaggggcgtttccgtcaaaacttacttggaaaacgtgtggactac
tctgcccgttcggttattgtggttggtccggagcttaagatgcatgaatgtggtcttcct
aaggacatggcagctgaattatacaaaccgtttattatccgtaagttaatagaaagaggt
attgttaaaacagttaagtctgctaaaaagattgttgacaggaaagagcctgttgtttac
gatatacttgaatatgtgatgaaaggacacccggttcttctgaaccgtgcccctaccctt
cacagattgggtattcaggctttccagccaaaacttatcgagggtaaagcaattcagttg
cacccacttgcatgtactgcgtttaacgcggactttgatggtgaccagatggctgttcac
cttcctcttggaaatgaagcaattcttgaagctcagctattgatgcttgcttctcataat
attcttaatccggctaacggtgcaccaattacagttccttcacaggacatggttctcgga
ctatactacattacaaaaatacgtccgggggctaaaggagaaggaatgattttctatggt
gaagaagaagctataattgcttataacgaaggagcagtagatattcatgctcttgttaaa
gtaattgttgatgatattgacgaagaaggaaatccgattcgtaaaatgcacgaaactact
gtaggccgtgttattacaaatgaggctattccaaaagaggtgggatatgtaaacgaactg
ctttctaaaaaatctcttcgcgatattattggaaaggttataaaaacttgtggtgttgca
cgtactgctcagtatcttgatgatattaaggacctcggttataaaatggcattcaaggga
ggattatcattcaatcttgaagatgtaattataccaaaagagaaagaatctcttattcag
caaggttacgacgaggttgagcagattcttgagaactacaatatgggattcattacctat
aatgaacgttataaccagattattgacacatggacgcatattaactccaagctgtcgaat
attctgatgaaacaattatctgaagatgaccagggattcaactctatttacatgatgctt
gattctggagcgcgtggttcgcgtgaacagatcagacagttatcaggtatgcgtggattg
atggcgaaacctcaaaaaagtggtgctgaaggttctcagattattgaaaacccaattctc
gctaactttaaagaaggtctgtcggttcttgagtatttcatctctactcacggtgctcgt
aaaggtcttgcggatacagctcttaaaacagctgacgctggttatctgacacgccgtctg
gttgatgtatctcaggatgttattgtaaatgaagttgactgtggcactttaagaggttta
acagcaacagctattaagaataacgaagaggtaattgcttctctgtatgaacgtattctt
ggtcgtgtctctgtacatgatgtacagcatcctaacactggagaaattatcgtaaattca
ggtgaagaaattactgaagagattgctaagaaaatagaagaatctccgattgaacgtgtt
gaaataagatcagttctgacttgtgaatcatcacatggagtatgtgctaaatgttatggt
agaaaccttgcaaccggtcatatggttcaaaaaggtgaagctgttggtgttattgctgct
cagtcaattggtgagccgggaactcagcttacacttagaacattccacgttgggggtatc
gcatctaacatagctgcagaaagtagaataatagcaaaatatgatggtattgttgagttt
gaagaactacgctttgtagaaacaactgactcagaaggcaaaccatataaagttgttgta
agccgtttgatggaaatgagaattatcgatccaaatacaaaaattgtattactttctcat
aacgtaccttacggttctaaactctacttcaatcagggtgacaaaattaaaaaaggtgat
ctgatatgtgaatgggatccattcaatgcagtaattgtatctgaagcatctggtagaatc
cgtttcgaaaactttaccgaaaaccttacttataaggttgaatctgacgaacagacaggg
ttgaaagaaaaggtaattattgaatctagggataaaacaaaagctccatctgcacatatt
gtagatgagaacgatgatattttaagaacatatacactacctttaggttctcacattgtt
aaaaatgagaatgatgttattaaagctggtgatacgttagtaaaaatacctcgtgcagtt
ggaaagtctggtgacatcaccggaggtttaccacgagttactgagttatttgaagcacgt
aatccttctaaccctgctgttgtaaccgaaattgatggtgaggtatcttttggtaagatt
aagagaggtaatcaggaaatatcagttacttcaaaaacaggtgaagttaaaaaatatctt
gttccattgtccaaacagatacttgttcaggaaaatgactatatccgtgctggtatgcct
ctttcagaaggcgcaattaccccggctgatatactggcaattaaagggcctacggctgta
caggagtatattgtgaacgaagttcaggatgtttatcgtctgcaaggtgttaagattaat
gataagcactttgaagtaatagtacgacagatgatgcgtaaagttgaggttgttgatccg
ggtgatactcgtttcttagaacagcaactggttgacaaactcgaaattatggaagaaaat
gaccgcacttggggtaagaaagtaattactgatgcgggtgattctcaaatattcgaacca
ggccagattgttacagttcgtaaactacgtgatgagaacagttctctgaaacgtcgtgac
ttgaaactagtggaagcacgtgatgcagttcctgcaacagctaatcaggtattacagggt
attacccgtgcagctcttcaaacaaccagctttatgtctgccgcttcattccaggaaaca
acaaaagtacttaacgatgcagctattcatggtaaagttgatactttggatggacttaaa
gagaacgttattgttgggcatcttatacctgccggtaccggtcagagagagtttgacaag
cttgttgttggatctcgtgaagattttgagaaaatcaatgcaaacaaaagaagtaatctg
ttccaggaagcaatttctcaggaataa
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