Fermentimonas caenicola: ING2E5B_1824
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Entry
ING2E5B_1824 CDS
T03818
Name
(GenBank) hypothetical protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbt
Fermentimonas caenicola
Pathway
pbt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ING2E5B_1824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbt03400
]
ING2E5B_1824
Enzymes [BR:
pbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ING2E5B_1824
DNA repair and recombination proteins [BR:
pbt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ING2E5B_1824
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Prominin
Motif
Other DBs
NCBI-ProteinID:
CEA16563
UniProt:
A0A098C2D2
LinkDB
All DBs
Position
chrI:complement(2051689..2055042)
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AA seq
1117 aa
AA seq
DB search
MVKTLDITELQQLVGKLPEVSAAGSILKKADVISVKGLHGSSRALFSSALFNKNSGVYLY
ILNDAESAGYFYHDLTQIVGSKDVLFFPSAYKRAAKFGQLDAANEILRTETLSRLQEENN
SLIIVSYPDALAEKTVSGDHLREQTLTVSVGEKVDSSFISEVLDDYGFQYVDYVYEPGQY
AQRGSILDVFSFASEFPFRIDFFGDEVETIRNFDMETQLSKERFDTIRIVPEFGRNSNKN
SSIFNLLPVSSIIGIEDIRWIISRIESLNEDDLHIEIDPQDVKFVKADLLTKDEFLSSVK
SFKQIRFDAKMQETADAVINFKTSAQPLYHKNFDLLTDSLHQYIDNGYTIYILSDSEKQQ
KRLFHIFEDRNDSIPFIPVNKTLHEGFIEDTLKICCFTDHQIFDRFHKYSLKSDRARSGK
IAITLKEINQLQPGDYVVHMDHGIGKFSGLVRLPIGDKIQEVIKINYLNNDSVFVSIHAL
HKISKYKGKEGESPKLNKLGSGAWEKVKAKTKSKIKDIARDLIKLYAERQQEKGFAFSKD
TYLQTELEASFMYEDTPDQVKATRDVKADMQSEQPMDRLICGDVGFGKTEIAVRAAFKAA
TDGKQTAVLVPTTVLATQHYNTFKDRLANFPVRVDYLSRVRTSKEQKDILKDLDEGKIDI
LIGTHRLVSKDVKFKDLGLLIIDEEQKFGVSVKEKLKQLKVNVDTLTMTATPIPRTLQFS
LMGSRDLSTISTPPPNRYPIQTEVHTFDIELIRDAINFELSRNGQVFIVNNRIQNIYELA
ELIKREIRDVRIAIGHGQMDPKKLEGVISDFMNHEQDILIATTIIESGIDMPNVNTIIVI
DAQNFGLSDLHQLRGRVGRSNRKAFCYLLAPPLYTLSGDSRRRLQAIENFSELGSGLHIA
MQDLDIRGAGNLLGAEQSGFIADLGYETYRKILAEAVQELRKEEFSDLYNEELSEKAKDE
DFVDDVHVESDLELMFPVTYIPNDAERVAIYRELDNMETELDILDFIERMEDRFGKMPKQ
GKELIRIVRLRRLARPLGIEKIMLKNGKMSLNLVSDSESPYYQSAAFGKLLNYVQVHPRN
CKLREAGKKRSLVIDNVKTVETAVATLEEISGYNISN
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaactttagacattacagaactacagcagttagttggaaagctacctgaggtt
tcggcagcaggctcaatactgaaaaaagcagatgttatatcggtaaagggtttgcacgga
tcgtcgcgtgcactgttttcatctgctctttttaataaaaattcaggcgtttatctctat
atattgaatgatgctgaatctgcagggtatttttatcatgacctgacacagatagtaggt
tcaaaagatgtgctattcttcccttctgcatataaaagagctgcaaaatttggacagctt
gatgcggctaatgagattttgagaactgaaacattaagcaggttacaagaggagaataac
tcgctgataattgtgagttacccggatgctcttgccgaaaagacggtttcgggtgatcat
ttgagagaacagacattaactgtttcggtgggggagaaggtcgactcatcattcattagt
gaggttcttgacgattatggatttcagtatgtggactatgtatatgagcccggtcaatat
gcgcagaggggtagtattcttgatgtgttttcttttgcatcagaatttccattcagaata
gatttctttggtgatgaggttgagacaattcgtaacttcgatatggaaactcagctctct
aaagagagatttgatactattcgtattgttcccgagtttggaagaaatagtaataagaat
tcatctatcttcaacttactgcctgtttcttcaataatcgggattgaagatatcagatgg
ataatcagtcgtattgaatcacttaatgaagatgatctgcatatagagattgatccacag
gatgttaaatttgtaaaggcggatcttctgacaaaagatgagtttttatcctctgtaaaa
tcttttaaacagattaggtttgatgctaaaatgcaggaaacagctgatgctgtaattaat
ttcaaaacttctgctcaacctttgtatcataagaattttgatctgctgaccgactcactg
catcaatatattgataatggatatactatctatatattaagtgatagtgagaaacagcag
aaacgtctgtttcatatttttgaggatcgtaatgattctattccttttattcctgtgaat
aaaactctgcatgagggtttcatagaagatactctgaaaatatgttgttttactgatcat
cagatatttgacagattccataagtatagccttaaatcagacagggcacgttcgggtaag
attgccattactcttaaggagataaatcagttgcagccgggtgattatgttgtgcatatg
gatcatggtatcggtaagttttcaggacttgtacgtctgcccattggcgataagattcag
gaggttattaaaattaattacctgaataatgattctgttttcgtttcaattcatgcattg
cataagatttctaagtataagggtaaggagggtgaatctccaaaattaaataaacttgga
agcggagcatgggaaaaagtaaaagcgaagactaagtcgaagattaaagatattgcgcgc
gacttaattaagctttatgctgaaaggcagcaggagaaaggatttgcattctcaaaggat
acctatctgcaaacagagctggaggcttcttttatgtatgaagatactcctgatcaggta
aaagcaactcgcgatgtgaaggctgatatgcagagtgaacagcccatggatcgtttgatt
tgcggagatgtagggtttgggaaaactgaaattgctgtcagggctgcttttaaggcagca
acagatggaaaacagacggctgtacttgttcctacaactgtgctggctactcagcactat
aatacatttaaagatcgacttgctaatttccctgtcagagttgattatttaagcagagta
agaacatctaaagagcaaaaagatattctaaaggatctggatgaagggaagatagatatt
ttaataggaactcaccgtttggtaagtaaagatgttaaatttaaggatctgggacttctt
ataattgatgaggaacaaaagtttggggtgtctgtaaaagagaaacttaaacagttgaag
gtgaatgtggatacgttgactatgactgctactcctataccacgtactttgcagttttct
cttatgggttcacgtgacttgtcaacaataagtactcctcctcctaatcgttatcctatt
cagacagaagtgcatacttttgatatagagttaattcgggatgctataaattttgaactg
agccgtaatggacaggttttcattgttaataatcgtatccagaatatttatgaacttgca
gaattaattaaaagggagataagagatgttcgaattgctattggtcatggtcagatggat
cctaaaaaacttgagggtgttatctctgattttatgaaccatgagcaggatattttaata
gctactaccattattgagtcgggtattgatatgcctaacgtaaatactattatagtgatt
gatgctcagaattttggattgagcgatttacatcagctacgtggaagggtgggaaggagc
aaccgtaaggctttttgttatcttcttgctccacctctttatactttgagcggtgattca
cgcagaaggttgcaggcaatcgagaatttttcagagctagggagtggtctgcatattgcc
atgcaggacttggatatcagaggtgccggtaatttgctgggagctgaacagagcggattt
atagctgatctgggttatgaaacctacagaaaaattcttgctgaggctgttcaggaattg
agaaaagaggagttttcagatctgtataatgaggaattgagtgaaaaggcaaaggatgag
gattttgttgatgatgtgcatgtagaaagtgacctcgagcttatgttcccagttacatat
attcctaatgatgctgaaagggttgcgatttatagggagctcgacaatatggagacagag
ctggatattcttgatttcattgagaggatggaggataggtttgggaagatgcctaaacaa
ggtaaggagcttatacgaattgtgcgactgaggcgtttggccagaccacttggtattgaa
aaaattatgcttaagaatggtaaaatgtcgctaaatcttgtatcagatagtgaatcgcct
tattatcagtctgctgcatttggtaaactacttaattatgttcaagttcatccacggaac
tgtaaattacgtgaagcaggtaaaaagagatctcttgtaattgataatgttaaaacagta
gagactgctgttgcaacacttgaagagatctctggatataatatatctaattga
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integrated database retrieval system
