Sedimentisphaera cyanobacteriorum L21-RPul-D3: L21SP3_00518
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Entry
L21SP3_00518 CDS
T04695
Symbol
rpoA_1
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pbu
Sedimentisphaera cyanobacteriorum L21-RPul-D3
Pathway
pbu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L21SP3_00518 (rpoA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbu03021
]
L21SP3_00518 (rpoA_1)
03400 DNA repair and recombination proteins [BR:
pbu03400
]
L21SP3_00518 (rpoA_1)
Enzymes [BR:
pbu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L21SP3_00518 (rpoA_1)
Transcription machinery [BR:
pbu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L21SP3_00518 (rpoA_1)
DNA repair and recombination proteins [BR:
pbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L21SP3_00518 (rpoA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
TPR_2
TPR_19
TPR_16
TPR_1
TPR_8
TPR_14
TPR_12
TPR_CcmH_CycH
TPR_7
TPR_17
TPR_6
ANAPC3
TPR_11
TPR_Slam
ARM_TT21_N
TPR_21
TPR_15
HAT_PRP39_C
Fis1_TPR_C
HAT_Syf1_CNRKL1_C
HEAT_Nup120
ARM_TT21
TPR_NUP160_120_M
ATP13
ARM_TT21_C
TPR_GEMI5
BTAD
Wzy_C_2
Motif
Other DBs
NCBI-ProteinID:
AQQ08728
UniProt:
A0A1Q2HMS4
LinkDB
All DBs
Position
complement(679408..680733)
Genome browser
AA seq
441 aa
AA seq
DB search
MQENTEKIWNSLFSSKTAPTLEDYQKVNLSVNNSERNKMKFVEKVDEIAGSSKKNSALKA
GIGYCIAGRYKDAIESLEKAGDSGIKNYCIAKSYLGVGRKAEAVDHFQKAVDEIDNPTVA
ELERIKVLIDGSDYRSAENALKNLSKVLKGKNAKYHCVYGNLYDAQGEFDKAAREYEKAL
DIDPAHEQTLLSFAYMLDLHGNPAQAIKLYKRIAESNPISVNVLLNMAVIYEDNGEYENA
ANCVDLILKYYPNHEQARMYKKDIESSRNMLYDEEQEQRKSTRSRILEKPISEYELSVRS
RNCLKKMDINTIGDLLRISEQELLSYKNFGETSLTEIRAILESEGLRLGQFNEDGTENTS
QKAETEKKKADNELLSKPVSELELSVRARRAIDRLSLQTFGEVVDKTEEELLNCKNFGVT
SLTEIKEKLAKYNLTLKQSEE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaacactgaaaaaatttggaacagcttattctcctctaaaaccgcacctact
ttagaggactaccagaaagtcaacctctcggtaaacaattcagagcgaaacaaaatgaag
tttgttgagaaggttgatgaaattgctggcagcagtaaaaagaattctgctttgaaggca
ggaatagggtattgcatcgcaggcagatacaaagacgctatagaaagcctcgaaaaggcc
ggagattcgggaatcaaaaactactgcattgccaagtcttacttaggagtaggcaggaaa
gccgaagcggttgaccattttcagaaagcagttgatgagatagacaaccccacggttgcc
gagcttgagaggattaaagtacttatagacggaagcgactaccgctccgcagaaaatgcg
ctcaaaaatctttcgaaggttttaaaaggcaaaaatgcaaagtatcactgcgtttacggt
aatctatacgatgcacagggggaatttgacaaggctgcaagggagtatgaaaaggctctg
gatatagaccctgcacatgagcagactctcctgagcttcgcctatatgctcgacctgcac
ggcaatccagctcaggccataaagctctacaagaggatcgccgagagcaatccgataagc
gtaaatgtgcttttgaatatggccgtgatctacgaggacaatggagaatacgaaaatgcg
gcaaactgcgttgaccttatcctgaagtactacccaaaccacgaacaggcaaggatgtac
aaaaaggacattgaaagctcgagaaatatgctctatgatgaggagcaggaacagagaaag
agcacaagaagcaggattctagagaagcctatcagcgaatatgagctttccgtgcgaagc
agaaactgcctcaagaagatggacataaacactataggcgacctgctcagaataagcgag
caggagctcctttcttacaaaaatttcggtgagacaagccttacagaaataagagccatc
ctcgaaagcgaaggcttgagactcgggcagttcaacgaagacggcaccgaaaacacatct
cagaaagccgaaacagagaagaaaaaggctgataacgaactgctctccaagcccgtttca
gagcttgagctttcagtaagggcaagacgagctatagacaggctcagccttcaaacattc
ggcgaggtggttgataaaactgaagaagaactgcttaactgcaagaatttcggtgttaca
agtcttaccgagattaaagagaagctggcaaaatacaatcttacactgaaacaatctgaa
gaatga
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