Sedimentisphaera cyanobacteriorum L21-RPul-D3: L21SP3_01709
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Entry
L21SP3_01709 CDS
T04695
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pbu
Sedimentisphaera cyanobacteriorum L21-RPul-D3
Pathway
pbu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pbu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
L21SP3_01709 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbu03021
]
L21SP3_01709 (rpoD)
Transcription machinery [BR:
pbu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L21SP3_01709 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_23
Sigma70_r4
HTH_28
HTH_29
Sigma70_r2
HTH_7
HTH_17
Sigma70_r4_2
HTH_11
HTH_38
Terminase_5
HTH_36
HTH_3
MerR
HTH_Tnp_ISL3
HTH_DeoR
MerR_1
HTH_Tnp_1
HTH_22
HTH_10
MarR_2
ENT
Motif
Other DBs
NCBI-ProteinID:
AQQ09888
UniProt:
A0A1Q2HR04
LinkDB
All DBs
Position
complement(2103534..2105192)
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AA seq
552 aa
AA seq
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MADFKTDKIKELLADVRFSPIRVKLEMLEKAESLYFLLDSGKQYPYEFVCSKITGYNPGG
EGEIEILEGSSVQADVRLFVLELSKTVSQPAAMLNHPAYSIASLSEMLGVSDKTIRRWKR
FGLIVRYLVFEDGIKKLAITQQAFEHFKKQNPEIITKASNFNRLSEEERKQILELSKQLK
EKRPEIARSKAAELISEKMHRSFETIRSSLQNAEQSEQSNIYLPRKGRVNSKIQKQISEL
YAGGESVGDICKMLGCSRSSVYRAINRSKAKRIEAVELGFVDSPDFQKPAQMKKIEEKKI
FLPSHVEVSTSPDDVNRYISRINRIKPATRDHELEMFKKYNCLKKLHQQEKKTLNLSSPS
GKKLQKMQSRLEEIGRIKHAVFQSNLRVVINIAAKHIGKHISFAELISEGNMALFRAIEG
YDYTKGFRFSTYAGWAVVRSFARITPSDSLPLEDSMHTDMRNVDVSSVPVVEQAGRDLDE
VISANLDPKEQFVVKSHYGLDDPSLIKKKKKTLKQIGKELGVSQETARQIELKALQKLRH
CLSVDMFDKLLK
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttcaaaacggacaaaatcaaagaactgcttgcagatgtacgcttctcgccg
atacgggtgaagctggagatgctcgagaaagccgaatcgctatacttcctcctcgattcc
ggcaagcagtatccttatgaatttgtctgcagcaagataacaggctacaacccgggcgga
gagggcgaaatcgagatcctcgaaggcagcagtgttcaggcggatgtgaggctgtttgtc
cttgagctcagcaaaacagtaagccagcctgcggcaatgcttaatcacccggcatattcg
attgcctcgctctctgagatgctcggagtgagcgataaaacaatccggcgatggaaaagg
ttcgggcttatagtcagatacctcgtatttgaagacggcatcaagaagctcgccattact
cagcaggccttcgaacatttcaaaaagcagaatccggagataataacaaaggcctccaac
ttcaacaggctttcagaagaagagagaaaacaaatcctcgagctttcaaaacagctcaaa
gaaaaacgtcctgagatcgcaaggagcaaagctgccgagctgatatctgaaaaaatgcac
cgaagctttgaaacaatcagaagcagccttcaaaacgcagaacaaagcgagcaaagcaat
atctatctcccgagaaagggcagggtaaacagtaaaatccagaaacagatcagcgagctg
tatgccggcggggagagcgtaggcgatatctgcaagatgctcggatgcagccgttccagc
gtgtacagggcaatcaatcgaagcaaggcaaagaggattgaagctgtagagctgggtttt
gttgattcacctgatttccaaaaacccgctcagatgaaaaaaatcgaagagaaaaagata
tttctgccttcacacgttgaggtgagcacatctcctgatgatgtgaacagatatatcagc
aggataaacagaataaagcctgcaacaagagaccatgaactcgagatgttcaagaaatac
aactgtttgaaaaagcttcaccagcaggaaaagaaaacgcttaatctttcctcgccttca
gggaagaagcttcagaaaatgcagagcagactcgaagagataggcaggataaagcatgct
gtttttcagtctaatctgagggtggttataaatatagccgctaagcatatcggcaaacat
atttcttttgctgaactgataagcgaggggaatatggctcttttcagggcgattgaaggc
tacgactacacaaagggctttcgattctcaacgtatgccggctgggcggtggtgcggagc
ttcgcaagaattacgccttctgattcgctgcctctggaggattcgatgcatacggatatg
aggaatgtggatgtaagctctgtgcctgtggttgagcaggcggggcgggatctcgatgag
gttatatcggcaaatctcgatccgaaggagcagtttgtagtgaagagccattacggcctc
gacgacccctcactgattaagaaaaagaagaaaacgctcaagcagattgggaaagagctc
ggcgtaagccaggaaaccgcaagacaaatcgagctgaaagccctgcagaaactccgccac
tgcctgtccgtggatatgttcgataaactgctcaaatag
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