Pseudomonas bubulae: V6B39_00195
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Entry
V6B39_00195 CDS
T10711
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pbub Pseudomonas bubulae
Pathway
pbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6B39_00195 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbub03019
]
V6B39_00195 (pnp)
03016 Transfer RNA biogenesis [BR:
pbub03016
]
V6B39_00195 (pnp)
Enzymes [BR:
pbub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
V6B39_00195 (pnp)
Messenger RNA biogenesis [BR:
pbub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V6B39_00195 (pnp)
Transfer RNA biogenesis [BR:
pbub03016
]
Prokaryotic type
tRNA degradation factors
V6B39_00195 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
Motif
Other DBs
NCBI-ProteinID:
WWR37896
LinkDB
All DBs
Position
complement(48638..50743)
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGSKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVLST
SKKTDPDVAAMIGTSAALAISGIPFDGPIGAARVAYHESTGYLLNPTYEQLAASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVIQAVKELAAEAAKPTWDWAAAPEA
TALLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSASEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALDARLNILGQMNQ
IIAVSRNELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASEA
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggttatcaaaaaatttcagttcggtcagtcgaccgttactctcgagactggc
cgtatcgcccgtcaggcttccggcgcagtattggtcaccgttgacgacgacgtcagcgtg
ttggtgactgtggtcggttccaagcaagcggatccaggcaagggtttcttccctctgtcg
gttcactaccaggaaaaaacctacgccgcgggtaaaatccctggcggtttcttcaagcgt
gaaggtcgcccttccgagaaagaaaccctgacgtcgcgtctgatcgaccgtccgatccgt
ccgctgttcccagaaggtttcatgaacgaagtgcaggttgtctgcaccgttctgtccacc
agcaagaaaaccgatccggacgtcgctgcgatgatcggtacttcggctgccctggccatt
tccggcatcccttttgatggtccgatcggcgctgcccgcgttgcttaccacgaaagcacc
ggttacctgctgaacccgacttacgagcaactggccgcttcgagcctggacatggttgtt
gccggtacttcggaagccgtattgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgccgtactgttcgcccacgacgaattccaggtggttatccaggctgtc
aaagagctggctgccgaagctgccaagccaacttgggactgggctgctgccccggaagcg
accgcactgctgggcgctatccgtgccgagttcggcgaagcgatctcccaggcttacacc
atcaccgtcaaggcagaccgttacgcgcgtctgggcgagttgaaggatcaggttgttgcc
aagctgtccggtgaagaaggccagccttctgccagcgaagttaaagctgcattcggcgaa
atcgaataccgcaccgttcgcgaaaacatcgttaacggcaagccgcgtatcgatggtcgt
gacaccaagactgttcgccctctgaacatcgaagttggcgttctgccgaagacccacggt
tcggccctgttcacccgtggtgaaactcaggcgctggttgttgcaactctgggtactgcc
cgtgacgcgcaactgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccgttctcggtaggtgagtgtggtcgcatgggtggtgctggtcgtcgc
gaaatcggtcacggccgtctggcccgtcgttcggttcaagccatgctgcctgctgccgac
gtgttcccgtacaccatccgtgttgtatcggaaatcactgaatccaacggttccagctcg
atggcatcggtttgcggtgcttccctggcactgatggatgccggtgtgccgatgaaggcg
ccggttgccggtatcgccatgggtctggttaaagaaggcgagaagttcgctgttctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtagccggtaccgcc
aaaggtgttaccgcgctgcagatggacatcaagatcaagggcatcaccgaagaaatcatg
gagatcgctctgggccaggccctggacgctcgcctaaacatcttgggccagatgaaccag
atcattgccgtatcgcgcaacgagctgtcggccaacgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgacgttatcggtaaaggcggcgcgaccatccgtgcaatc
tgtgaagaaaccaaggcttcgatcgatatcgaagacgacggttcgatcaagatcttcggc
gaatccaaagaagcagcagaagccgcgcgtcagcgcgttctgggcatcaccgctgaagcc
gagatcggcaagatctacgtgggcaaggttgagcgtatcgtcgacttcggcgcattcgta
aacatcctgccgggcaaagacggcctggttcacatctccatgctgagcgatgctcgcgtt
gagaaagtgactgacattctgaaagaaggtcaggaagtggaagtactggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaggacgtcgctgctgccaaggcttcggaa
gcttaa
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