KEGG   Pseudomonas bubulae: V6B39_00445
Entry
V6B39_00445       CDS       T10711                                 
Name
(GenBank) HsdR family type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
pbub  Pseudomonas bubulae
Brite
KEGG Orthology (KO) [BR:pbub00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:pbub02048]
    V6B39_00445
Enzymes [BR:pbub01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     V6B39_00445
Prokaryotic defense system [BR:pbub02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   V6B39_00445
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N T1R_D3-like ResIII DEAD
Other DBs
NCBI-ProteinID: WWR37943
LinkDB
Position
complement(104522..107620)
AA seq 1032 aa
MSNVGQRERATQQRVARFFQDQLGWSHLGDWHSREGNRNIESGLLSRWLQGRDISDALIT
RVLRQLDVAAALGEGKNLYDANKAVYQLLRYGVKDKEGAGEQNKTVWLIDWHNPEANDFA
IAEEVSIKGENKKRPDIVLYVNGIALGVIELKRSSVSVSEGIRQNLDNQKKDFIRNFFST
QQLVMAGNDTQGLRYGSIETPEKYYLEWKEPLTTESSGYLLDDHLACMCNKQRFLQIIHD
FIVFDAGTKKTCRHNQFFGIEASKPFLARREGGIIWHTQGSGKSLTMVWLAKWIRENIRN
SRVLIITDRTELDEQIEKVFYGVDEEILRSKSGADLLDTLNMPVPWLVCSLVHKFGRHGE
SESEEAADAFIEELRNSLPKDFRVKGDLYVFVDECHRTQSGKLHEAMKDILPEAMFIGFT
GTPLMKKDKKKSIEIFGPFIHTYKFDEAVADGVVLDLRYEARDIDQRVTSQKKVDEWFEA
KTRGLSNLGKTQLKQKWGSMQKLLSSKSRLEQIVNDIMLDMDTRPRLMDGRGNAMLVCAS
VYQACKVYELFSETDLAGKCAIVTSYKPMASEIKGEETGEGLTEKLAKYEIYRRMLANYF
DQPAEEAAKRVEEFEKQVKQRFINEPGQMRLLIVVDKLLTGFDAPPATYLYIDKQMADHS
LFQAICRVNRLDGDDKEYGYIIDYKDLFRSLDKAITDYTAGAFDKYDKEDVAGLLKDRLV
QAREDLDNALEAVRALCESVLAPRNMQDYKHYFCGVSGENKDDLPEKEALRLALYHSVAK
LLRAWANLANEMLEAGYNKAQEETIRADVIHFEKVRDEVKLASGDLVEMKRFEPAMRKLL
DMYVRADDSEVLMDFEELGLIELVVEKGAGALEDVSEDLRRDPDAMAETIENNVRKTIVD
ENPVNPKYYEQMSVLLDELIELRRQKALDYQEYLEQIRDLARKVKSPGSNSQHQYPGSID
TSAKRALYDNLDRDEVLATRIDTAVRYTKKADWVGDRFKERELANAIREESAGYKVDIPN
LMELIKAQKDYR
NT seq 3099 nt   +upstreamnt  +downstreamnt
atgagcaatgttggccagcgcgaacgcgccactcagcaacgtgtcgcccgttttttccag
gatcaactcggctggagtcatcttggcgactggcattcgcgtgagggcaaccgcaatatt
gagtccggtctgctgagtcgttggttgcaagggcgtgatatcagtgacgcattgatcaca
cgtgtgttgcgccagctggatgtggccgctgcgttgggtgaaggcaagaatctgtatgac
gccaacaaggcggtgtaccagttgttgcgctatggcgtgaaagacaaagagggggctggc
gagcagaacaaaactgtttggctgattgactggcacaatcccgaagccaatgacttcgct
atcgctgaagaagtgtcgatcaagggcgagaataagaagcgcccggatattgtgctttat
gtgaatggtattgctctgggtgtgattgagctgaagcgctcctcggtctcagtctccgaa
ggtatccggcagaacctggacaatcagaagaaagacttcatacgcaatttcttcagcacc
cagcagctggttatggctgggaacgacacccaagggctgcgctacggctctatcgaaacg
ccagagaagtactacctggagtggaaagagccactcactacggagtcttccggttatttg
ctcgatgaccacctagcttgcatgtgcaataaacagcgctttctacagattatccatgac
ttcattgtgtttgatgctggtaccaagaagacctgccggcataaccaatttttcggtatt
gaggcgagcaagccatttttggctcgacgtgaaggcggaatcatttggcacactcagggc
tccggtaagagcttgaccatggtctggctggccaagtggattcgggaaaatattcggaac
tcacgcgtgctgatcattaccgatcgtaccgagttggatgagcagattgagaaggttttc
tacggtgttgatgaggaaatactacgcagtaaaagcggtgctgatctgctcgataccctg
aatatgcccgtaccttggctcgtgtgttcgttggtgcacaagtttggtcgccatggcgag
tcggagagtgaagaagccgccgatgcgtttattgaggagctgcgtaacagcttgcccaaa
gactttcgtgtcaaaggcgatctctatgtgttcgttgacgaatgccatcgcactcagtcg
ggaaagctgcacgaggcaatgaaggacattctgccggaagccatgtttattggtttcacc
ggcacaccgttgatgaagaaggacaagaagaagtctatcgagatttttggcccctttatt
catacctacaaattcgacgaagcagtggccgatggtgtggtgcttgacttgcgctatgag
gcgcgggatatcgaccagcgtgtgacttcacagaagaaggtggatgagtggtttgaggcc
aagacacgaggcctgtcgaaccttggcaaaacccagctcaaacagaaatggggctcgatg
cagaaactgttgtccagcaagtcgcggctggagcagatcgtcaatgacatcatgcttgat
atggacacgcggccgcgcctgatggatggccggggtaacgccatgttggtgtgcgccagt
gtctatcaggcttgcaaggtctatgagttgttcagtgagacagacctcgctggcaaatgc
gccattgtcaccagctacaagccgatggcctccgagatcaagggggaagagactggcgaa
gggttgacagaaaaactggccaaatacgaaatctaccggcgcatgttggccaactacttt
gaccaacccgccgaggaagcagccaaacgcgttgaagagttcgaaaagcaagtcaagcag
cgcttcattaacgaaccaggacaaatgcgtctgctgatcgtggtcgacaagttgttgacg
gggtttgatgcgcctccggcaacctacttgtacattgataagcagatggccgatcacagc
ctgttccaggcaatttgccgagtcaatcgcctggatggtgatgacaaggagtacggctac
atcatcgactataaggatctgtttcgctccctggataaggccattaccgactacaccgcc
ggggcttttgacaagtatgacaaggaagatgtcgccggcctgttgaaagatcgtttggtc
caggcgcgagaggatctggataacgccctggaggccgtgcgcgcactctgtgaatcggtg
ctggcgccgcgcaacatgcaggattacaaacactatttctgcggcgtgtcgggagagaac
aaggacgacctacctgagaaggaagccctgcgactggcgctttatcacagcgtggcaaag
ctgctgcgtgcctgggccaacctggccaatgagatgcttgaggcgggttacaacaaagct
caggaagaaactatccgggctgacgtgattcactttgaaaaggttcgcgatgaagtgaag
ctcgccagtggcgatctggttgagatgaagcgattcgagccggcgatgcgtaagctgttg
gacatgtatgtccgtgctgatgacagtgaagtattgatggacttcgaggagttggggctg
attgagttggtggtggagaaaggcgcaggtgcattggaggatgtctctgaggatctgcgt
agagatcccgatgccatggccgaaaccatcgaaaataacgtacgcaaaaccatcgtcgat
gaaaacccagtaaaccccaaatactacgagcagatgtctgtgctgctggatgagttgatc
gaattgcgtcggcagaaggcattggattaccaggagtaccttgagcaaattcgagacttg
gctcgcaaggtgaaaagtcctgggagtaacagccaacaccagtatcccggatcaattgat
acatcggccaaacgtgccctgtacgacaaccttgatcgggatgaggtgttggcgacccgc
atagataccgcagtgcgctataccaagaaagctgactgggttggtgatcgtttcaaggaa
cgtgaactggccaatgccatccgcgaggaaagcgcagggtataaagtcgatattcctaac
ctcatggagctgatcaaagcccagaaggattatcgctaa

DBGET integrated database retrieval system