Pseudomonas bubulae: V6B39_00875
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Entry
V6B39_00875 CDS
T10711
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pbub Pseudomonas bubulae
Pathway
pbub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
V6B39_00875 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbub03400
]
V6B39_00875 (recC)
Enzymes [BR:
pbub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
V6B39_00875 (recC)
DNA repair and recombination proteins [BR:
pbub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
V6B39_00875 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
WWR38026
LinkDB
All DBs
Position
complement(214544..217993)
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AA seq
1149 aa
AA seq
DB search
MSVATPLNAGFMVVHGNRLDELRSLVVSWMRLYPLAPLENEIALVQSNGIAQWLKLALAE
DARDDDLGGCGIAAAVDVQLPGSFLWQLYRLVLGSEEIPAKSLLDKAPLTWRLMRLLPAL
IDQPHFEPLQRFLTHDTDLRKRYQLSERLADLFDQYQVYRADWLEDWAAGRHQLRNARGE
SPALSPANCWQAELWRALLLDVGEEGMSQSRAGVHQRFMDKINSLEQAPPGLPARVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWSDIVADKDLLRHQYKRQARKSGMPTAL
DLDTLHQHAHPLLAAWGKQGRDYINLLDSYDEPNSYRAAFRDGRIDLFSEVEPLNLLNQL
QDDILELRPLNETRELWPAIDLAQDRSIRFHVAHSAQREVEILHDQLLARFSENPQLQPR
DVIVMVPDVDSYAPHIRAVFGQIERDDRRFIPYTLADQGQRGRDPLLIALEHLLKLPDSR
FPVSEILDLLDVPSLRARFKVQERDLPTLHRWIEGAGIRWGLNAQQRAGLGLPEQLEQNS
WRFGLRRMLLGYAVGSGEACDGIEPYDEIGGLDAVLIGPLVALLDALEIAHQELSQPALP
QLWGERLQALVQLFFQAETEHDDYLLAQLEELRETWLETCELVGLQDELPLTVVREAWLT
GLDQGKLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSARDQLYISWVGRSIRDNSERPACVLIGQLRDHLASGWHLQG
GGDLLEAMTQEHPLQPFSTRYFHEGNPNLFSYAREWQRLHAPQPEPVGPGTLGAHIQEEP
LNLTQLQDFLRNPVRHFFSQRLKVFFEAAEVPLADEEPFVLDALQRYTLSDSLLEAALAQ
PDQLESALHTRAQRLQGSGLLPMAGFGECLQHELIEPLPDVLQRYQQLLALWPTPLNSAL
PVSFEDQGLTLEGWLGNLHQRSDKGLLSVTTIPNSIGAIKTRKWHRLTRPWVNHLAACAC
GLQMTTALVASDDTLLLEPLDTKQAREILGNLLTAWKVGMSHPLPVAVKTAFAWLAQTDP
AKADAAAQKAYEGDGQTSDGERRESAALARQFPDYAALMAGDEFEEWCDALYRPLFDAPW
RSLNSEASR
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttgctacgcctctcaatgcgggttttatggtggttcatggcaaccgcctcgat
gagttacgcagcctggttgtcagctggatgcgcctttacccgctggctcctctggagaac
gaaattgctctggtgcagagtaacggcatcgcccaatggttaaagctggctcttgccgaa
gatgcccgcgacgacgacctcggcggctgcggtattgctgcagccgtggacgtgcagttg
cccggcagttttttgtggcagctctatcggctggtactgggcagtgaagaaatccccgcc
aagtcattgctcgataaagccccgctgacctggcgtctgatgcgcctgctgcctgccctt
atcgatcagccgcacttcgaacccctgcagcgcttcctgactcacgacaccgatctgcgc
aagcgctatcagctgtctgagcgtcttgccgacctgttcgaccaatatcaggtgtatcgc
gccgactggctggaggactgggccgcaggtcgccatcaattgcgtaacgcccggggcgaa
agcccggccctgagcccggctaactgctggcaggccgagttgtggcgtgcgcttctgctc
gatgtaggtgaagagggcatgtcacagagccgtgccggcgttcatcagcgttttatggac
aagatcaacagcctcgagcaagccccgcccggcttgcccgcgcgggtgatcgtttttggc
atctcgtcactgcctgctcaggcacttgaagccctggccgggctcgcccgcttcagccag
gtattgttgtgtgtgcacaacccttgccgccatcattggtctgacatcgttgccgataaa
gatctgctgcgtcatcagtacaaacgtcaggcccgcaaaagcggcatgcctacagcactt
gatctggataccctgcatcagcatgcccatcccttgctggctgcctggggtaaacaaggc
cgtgactatatcaacctgctcgacagctacgacgagcccaacagttatcgcgcagctttt
cgcgatggccgtatcgacctgttcagcgaagttgaaccgcttaacctgctcaaccagttg
caggacgatattcttgagctgcgcccgctcaacgaaacccgggagctatggcccgccatc
gatctggcacaggatcgctcaatacgcttccatgttgcgcatagtgcgcagcgtgaagtc
gagatcctgcacgaccagttgctcgcacgtttcagcgagaaccctcagttgcagccacgt
gatgtgattgtgatggtgccggatgtggacagttacgcgccgcatatccgtgctgttttt
gggcaaatcgaacgtgatgatcggcgctttattccctacaccctggccgaccaggggcag
cgtggtcgtgatccattgctgatcgctctcgaacacttgcttaaattgcctgacagccgt
ttccccgtcagtgaaatcctggatttgctcgacgtgccatcactgcgcgcccgcttcaag
gtgcaagagcgcgacttgccaaccttgcatcgctggattgaaggcgctggcattcgctgg
gggttgaatgcgcagcagcgtgccggtcttggtttgcccgagcaactggagcaaaacagt
tggcgttttggtttgcgccgcatgttgctcggatatgccgtaggcagtggtgaggcctgc
gacggtattgagccctacgatgagatcggggggctggatgccgtactgatcggcccgctg
gtagctttgctcgatgcgttggaaatcgctcatcaggagctctcgcaaccggcattgccg
cagctctggggcgagcgcctgcaggctttggtgcagctgtttttccaggccgaaacagag
cacgacgactacctgttggcccagcttgaagagctgcgcgaaacctggctcgaaacctgt
gaactggttggtctgcaggatgagttaccgctgaccgtagtacgcgaggcctggcttacc
gggcttgaccagggcaagttgtcacaacgtttcctggccggggcggtcaacttctgcacc
ctgatgccgatgcgggccatccccttcaagctggtatgcctgctgggcatgaacgacggc
gactacccgcgagcccagccgccgctggacttcgatctgatgggcagcgattaccgcccg
ggcgatcgttcgcgccgcgaagatgaccgttacctgcttcttgaagcgctgctttcggct
cgtgatcagctttatatcagctgggtagggcgcagtattcgcgacaacagcgagcgcccg
gcctgtgtcctgattggccagctgcgtgaccaccttgccagtggttggcatctgcaaggg
ggcggcgacctgcttgaggccatgacccaagagcacccactgcaaccctttagcactcgt
tactttcatgaaggcaaccctaacctgttcagctatgcgcgtgaatggcagcgcttgcat
gcgccacaaccggagcccgttggccccggcacgcttggcgcgcatatccaggaagaacca
ctgaacctgacgcagttacaggattttttgcgaaacccagtgcgccacttctttagtcag
cgcctgaaagtattctttgaggcagcggaagtacctttggccgatgaagaacctttcgta
ctcgacgcattgcagcgctacaccttgagcgacagcctgcttgaagctgcactggcgcag
ccggatcaactggaaagcgccttgcatacccgtgcccagcgcctgcaaggcagcggtttg
ctgcccatggccgggtttggagagtgcctgcaacacgaactaatcgagccattaccagat
gtactacagcgctatcagcaactgctggctctttggcctacaccgctaaacagcgcgttg
cctgtcagttttgaggatcaaggtctgacgctggaaggctggctcggcaatctgcaccag
cgtagcgacaagggcttactgtctgtcaccactattcctaatagcattggtgcgatcaaa
acccggaaatggcaccgtttgacccggccatgggtaaaccatctggcagcctgcgcctgt
ggcctgcagatgacgaccgccctggtggccagtgatgacaccttgctgctcgaacctctg
gacaccaagcaggcccgggagattcttggcaacttgctcactgcctggaaagtcgggatg
agccacccgctgcctgtcgcggtaaaaactgcttttgcctggctggcccagacagatccg
gccaaggccgatgcggcggcgcaaaaagcctatgagggtgatggccaaaccagtgacggc
gagcgccgtgaaagcgccgccctggcccggcagtttcctgactatgcggccttgatggct
ggcgacgaattcgaagagtggtgcgatgccctctatcgacccctttttgatgcgccctgg
cgctcattaaacagcgaggcatcccgctaa
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