Pseudomonas bubulae: V6B39_02490
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Entry
V6B39_02490 CDS
T10711
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pbub Pseudomonas bubulae
Pathway
pbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6B39_02490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbub03019
]
V6B39_02490
03400 DNA repair and recombination proteins [BR:
pbub03400
]
V6B39_02490
Enzymes [BR:
pbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6B39_02490
Messenger RNA biogenesis [BR:
pbub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6B39_02490
DNA repair and recombination proteins [BR:
pbub03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
V6B39_02490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
PorA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WWR38328
LinkDB
All DBs
Position
complement(603402..605339)
Genome browser
AA seq
645 aa
AA seq
DB search
MYNTLEQVFGYPQFRAGQEAVVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLQRHGIAAASIDSAQSREDASAVMARAKAGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPNVIADM
QAKFAIAETDVITTGFYRANLNLWVEPVSGAAKRQRLVQWMNGRIGQPSIVYVTLQRTAE
QIAEHLSQHGISANAYHAGLPHEQREGIQRQFMGGQLNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELAGIRCVLEELR
GAIPEGQWEFMLLPLSDQSNIRQLPLKTLLVQLELRGLIAPRYAYFAEYRFKFLIEPEVL
LAKFEGERQQFVSAIIQTSTRARTWATVNFDTLYEQHQADRNRVVKALDYFQEKGWIELE
SKQMTDVYSLLVSDFDAEALSQELHAYFCAHESGEIKRIHAMLALFASDTCLSYRLARYF
GDDQAPRQCGHCSVCAGQVARLPEPPALAPLVDKNVEALCGAFIHRHQEYAGSYPPAERL
TRFLCGISVPMFTKMKARAIPGFAALENYPYAEVRDWAAKHLNGL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacaccctggaacaggttttcggttatccacaatttcgtgccgggcaagaggcg
gtggtcagtgctgttttggccgggcgttcggcggcagcgattttccccacgggctcgggc
aagtcgttgtgttatcaactgccggcgctgctgttgccccacctgacgctggtggtttcg
ccgctgttggctcttatgcaggaccaactggcttttttgcagcgccacggcattgccgcc
gccagtattgattccgcgcaaagtcgtgaggacgccagtgccgttatggcccgggccaag
gcgggcgaattgaagatcctgatgatttcggtcgagcgcctgaaaaacgagcgcttccgt
aactttttgcagcaagtaccgatttcactgctggtggtggatgaagcccactgtatttct
gaatgggggcataactttcgccctgattatctgaaacttccagactaccagcgccagttc
aatatcccccaagccttgctgcttacagcgaccgccacgcccaatgtgatcgcggacatg
caggccaagttcgcgattgccgagacggatgtgatcaccaccggcttctatcgcgccaac
ctcaacctgtgggttgagccggtcagcggcgcggcaaagcgccagcgcctggtgcagtgg
atgaacgggcgcatcggccagccgagcatcgtctatgtcacattgcaacggaccgccgag
cagattgccgagcacctcagccagcacggtatcagtgccaatgcttatcacgccggtttg
ccccatgagcagcgcgagggcattcagcgccagttcatgggcgggcagctgaactgcatc
gtcgccaccatcgccttcgggatgggtatcgataaaagcgatatccgtaatgtggtgcat
ttcgacctgcccaaatcgattgaaaactatagccaggaaatcggtcgcgccgggcgtgat
ggccagccctccgactgtctggtgctggccaaccgcgacagccttaacgtgctggaaaac
tttgtgtatggcgacacgcccgagcttgcgggtattcgctgtgtacttgaggagttgcgt
ggagcaatacctgaagggcagtgggaatttatgctgctgccgttgtccgatcagagcaat
attcgtcagctaccgcttaaaaccttgctggtgcagctggagttgcgcggcttgatagca
ccgcgctatgcctactttgccgagtatcgtttcaaattcctgatcgagcccgaggtatta
ctggccaaattcgaaggtgaacgtcagcaatttgtctcggccatcattcagacctccacc
cgcgccagaacctgggccacggtaaatttcgacaccctgtacgagcagcatcaggccgat
cgcaatcgggtggtcaaagcgctggattattttcaggagaagggttggatcgagcttgaa
agcaagcagatgaccgacgtctacagcctgctggtgagcgattttgatgccgaggcatta
agccaggagctgcatgcttacttctgtgcccacgagagcggcgagatcaagcggattcac
gcaatgctggcgctgtttgccagtgatacctgtctgagctaccgactggcccggtatttt
ggcgatgaccaggcacctcggcagtgcgggcattgctcggtatgcgcaggacaggtggcg
cgtttaccggagccccccgcgctggcgccgcttgtggataaaaacgttgaagcactgtgt
ggcgcttttatccacaggcatcaggaatacgcaggaagttatcccccggcagaacgcctg
acccggtttttatgcgggatcagtgtgccgatgttcaccaagatgaaagcgcgggccatt
ccggggtttgcagcgttggaaaattatccctatgccgaggttcgcgattgggctgcgaag
catctgaacggtctgtaa
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