Pseudomonas bubulae: V6B39_04400
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Entry
V6B39_04400 CDS
T10711
Name
(GenBank) RNA pyrophosphohydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
pbub Pseudomonas bubulae
Pathway
pbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6B39_04400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbub03019
]
V6B39_04400
Messenger RNA biogenesis [BR:
pbub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
V6B39_04400
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NUDIX
NUDIX_4
Nudt16-like
NUDIX_2
Motif
Other DBs
NCBI-ProteinID:
WWR38684
UniProt:
A0ABZ2H728
LinkDB
All DBs
Position
complement(1015253..1015732)
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AA seq
159 aa
AA seq
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MIDPDGFRPNVGIILTNDAGQVLWARRINQDAWQFPQGGINPDETPEDALYRELNEEVGL
EREDVEILACTRGWLRYRLPQRLVRTHSQPLCIGQKQKWFLLRLVSNEQRVRMDLTGKPE
FDGWRWVSYWYPLGQVVTFKREVYRRALKELAPRLLTRA
NT seq
480 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgaccccgatggtttccgccctaatgtcgggattattctgacaaatgacgctggt
caggtactttgggctcgccgtatcaatcaagacgcctggcagtttccacagggtggcatc
aaccctgacgaaacgccggaagacgccttgtaccgtgagctgaacgaagaagttggcctt
gaacgcgaagatgtagaaatactcgcctgcacgcgaggctggttgcgttatcgtttgccg
caacgcctggtacgtacccacagccaaccgctgtgcatcggccagaagcaaaagtggttt
ttgctgcgcctggtctccaacgagcaacgggtgcggatggatttgaccggtaaaccggag
ttcgatggctggcgttgggtcagttattggtacccgttgggccaggtggtgacattcaag
cgcgaggtctaccgtcgcgctctcaaagagcttgccccgcgccttttaacgcgcgcctga
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