Pseudomonas bubulae: V6B39_04545
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Entry
V6B39_04545 CDS
T10711
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pbub Pseudomonas bubulae
Pathway
pbub03030
DNA replication
pbub03410
Base excision repair
pbub03420
Nucleotide excision repair
pbub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V6B39_04545 (polA)
03410 Base excision repair
V6B39_04545 (polA)
03420 Nucleotide excision repair
V6B39_04545 (polA)
03440 Homologous recombination
V6B39_04545 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbub03032
]
V6B39_04545 (polA)
03400 DNA repair and recombination proteins [BR:
pbub03400
]
V6B39_04545 (polA)
Enzymes [BR:
pbub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V6B39_04545 (polA)
DNA replication proteins [BR:
pbub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V6B39_04545 (polA)
DNA repair and recombination proteins [BR:
pbub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
V6B39_04545 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V6B39_04545 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Obc1_cap
Motif
Other DBs
NCBI-ProteinID:
WWR38712
LinkDB
All DBs
Position
complement(1045083..1047851)
Genome browser
AA seq
922 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDDMYAEYKANRPSMPDDMRVQIEPLHASVIALGFPLLCVEGVEADDVIGTLAR
SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVMDIEGVKEKFGVSPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVGGGLVDLYEKLDIVPTLPIRGAKNLPAKLEEHREM
AFLSYQLATIKIDVPLDIGLEDLHLKAPDCEKLIELYTELEFKSWIAEVEREAKRAGQVI
VHEAPEAPAEAEQQYETILDQARFDVWLKKLNDAKLIAFDTETTGLDAQQAQLVGLSFAV
KPGEAAYIPLTHSYMGVPEQLDRDTVLRALKPLLEDPSKAKVGQHAKYDMNILANCAIGG
DQSCGIMVQGVAFDTMLESYVLDSTGSRHDMDSLALKYLGHTTTSFQDIAGKGVKQLTFD
QISLEQAGPYAAEDADVTLRLHHVLHEKLAAIPSLNSVLTDIEMPLVPVLARIERQGALV
DANLLGIQSVELGDKLVALEREAFAIAGEEFNLSSPKQLGVILYEKLGLPIISKTAKGQP
STAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVTAT
GRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHA
FRNNLDVHSATAAEVFGVDLADVTIDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQA
YIDRYFARYPGVLDYMERTRTQAAEQGYVETIFGRRLYLPEINAKNPALRKGAERTAINA
PMQGTAADIIKKAMVSVDNWLSASGLDARVILQVHDELVLEVREDLVDQVRDEVRIHMSE
AAKLDVPLVVEVGVGNNWDEAH
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagctcccctcgtcctggtggacggttcttcatatctgtaccgcgccttccac
gcgctgccgccgctgactacgtccaaagggctgccgacaggcgccgtgaagggcgtattg
aacatgctcaaaagcctgcgcaagcagtatccggacagcccgttcgcggtggttttcgat
gccaagggcgggacatttcgcgatgacatgtacgccgagtacaaggccaaccgcccgagc
atgcccgatgacatgcgggtgcaaatcgagccattgcacgccagtgtgattgcgctgggt
ttccccttgctgtgcgttgaaggcgtggaggccgatgatgtcatcggcacgctggcccgc
agcagcgccgcggcagaccgaccagtggtcatctccaccggtgacaaggacatggcccag
ctggttgatggccacatcacgctggttaacaccatgaccggcagcgtgatggacattgag
ggcgttaaagagaaatttggcgtatcgcccgagcagatcatcgactacctcgcgctgatg
ggcgattcgtctgacaacattccaggcgtacctggtattggtcccaagacagcgtccggc
ttgctggtgggtgtaggcggtggtttggtcgatctgtacgaaaagctcgatatcgtgccg
accctgcccattcgcggcgccaaaaacttgcctgccaaactcgaagaacatcgcgaaatg
gcgtttttgtcctatcaattggcgacgatcaagatcgatgtgccgctggatatcggcctg
gaagacttgcacctcaaggcgcctgactgcgaaaagttgattgagctgtacaccgaactt
gagttcaaaagctggattgccgaagttgagcgcgaggccaagcgtgccgggcaggtgatt
gtgcatgaggctcctgaagcgcccgccgaagcggagcaacagtacgagaccatcctcgat
caggctcgctttgatgtatggctaaaaaaactcaacgacgccaaattgattgcctttgat
accgaaaccaccggcctggacgcgcagcaagcgcagctggtgggcctgtcgttcgcggtc
aagcctggcgaagcggcttacattccattgacccattcctacatgggcgtacccgagcaa
ctggatcgcgacacggtattgcgtgccctcaagccgctgctggaagacccgagcaaagcc
aaggtcggacaacacgccaagtacgacatgaatattctggccaactgcgccatcggtggc
gatcaatcgtgcgggatcatggttcagggcgttgccttcgacaccatgcttgagtcctat
gtgctcgactccacgggcagccgccacgatatggacagcctggccctcaaatacctgggc
cacaccaccaccagcttccaggacattgccggcaagggcgtcaagcaactgaccttcgac
cagatttccctggagcaggccggcccgtatgcggccgaagatgccgacgtgaccttgcgc
ctgcaccatgtactgcacgaaaaactcgcagcgatccctagcctcaacagcgtattgacg
gacatcgagatgccgctggtgccggtactggcgcgtattgaacgccagggcgcgctggtg
gatgccaacctgctgggtatccagagtgttgagctgggtgacaagctggttgcgctggag
cgtgaggcttttgccattgccggtgaggagttcaacctgagctcacccaagcaactgggt
gtgatcctgtatgaaaaactcggtctgccaatcatcagcaaaacggccaaaggccagcct
tcgactgccgaagccgtgctggcggaactggccgagcaggacttcccgctacccaaggtg
ctgatgcagtaccgctccatgagcaagctgaaaagcacctacaccgatcgcctgcctgag
cagatcaacccgcgtacgggccgtatccacacctcctaccaccaggccgtcacggcgacc
ggtcgtttgtcttcaagtgatccaaacttgcagaacattccgatccgtaccgccgaaggt
cgtcggatccgtcaggcctttgtggcccctaaaggctacaaactgctggcggccgactac
tcgcaaatcgagctgcggatcatggcccacctggccaaggacgaaggtttgctgcatgcc
ttccgcaacaacctggacgtgcacagcgccaccgctgccgaggtattcggggttgatctg
gcggacgtcaccatcgaccagcgccgcagtgccaaggccatcaacttcggcctgatctat
ggcatgagcgcctttggcctggccaaacagatcggcgtcgaccgcaaacagtcgcaagcc
tatatcgaccgttatttcgcacgttacccgggcgtgctggactacatggagcgcacgcgc
acccaggctgccgagcaaggctatgtcgagaccattttcggtcgtcgcttgtacctgccg
gaaatcaacgcgaaaaacccggcgctgcgcaaaggcgccgaacgcacggcaatcaacgca
ccgatgcagggcacggcagccgatatcatcaaaaaagccatggtgtctgtggataactgg
ctcagcgcctcaggcctcgatgcccgcgtcatcctgcaggtacacgatgaactggtgcta
gaagtgcgcgaagacctggtggaccaggtgcgtgatgaagtgcggatacacatgagcgaa
gcggcgaagctggatgtgccgctagtggttgaagtaggcgtgggcaacaactgggatgaa
gcgcattaa
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