Pseudomonas bubulae: V6B39_05350
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Entry
V6B39_05350 CDS
T10711
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pbub Pseudomonas bubulae
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pbub03009
]
V6B39_05350 (dbpA)
Enzymes [BR:
pbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
V6B39_05350 (dbpA)
Ribosome biogenesis [BR:
pbub03009
]
Prokaryotic type
rRNA helicases
V6B39_05350 (dbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
WWR40078
LinkDB
All DBs
Position
complement(1208125..1209462)
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AA seq
445 aa
AA seq
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MLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPINPRFFGCQ
ALVICPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPGRI
QQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIVKTPERRQTLLFSATYPAGIKQ
LSSKFMRNPQQVKAEALHTDSQIEQRFYEISPEERMSAVTKVLGHFRPQSCVAFCFTKQQ
VQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDALDMV
LNVELARDSEIHIHRVGRTGRAGEKGVAISLVAPSEAHRAQAIEQLQKAPLNWETLDTLT
SQGGAPLLPAMSTLVIGAGRKDKVRPGDILGALTGDAGIPGAQVGKIAIFDFQAYVAVDR
TIAKQAAQRLSEGKIKGRVLRVRVL
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgctggctaacctcgactccctcggttatgcccagatgacgccgattcaggcgcagagc
ttgccggtgatcctcaaaggcatggacctgatcgcccaggccaagaccggtagtggcaaa
actgccgccttcggcatcggcctgctgaacccgatcaacccgcgcttcttcggctgccag
gcccttgtgatctgcccgacccgcgaactggctgaccaggtcgccaaggaaatccgccgc
ctggcccgcgccgaagacaacatcaaggtcctgaccctgtgtggtggcgtgtcgttcggc
ccgcagatcggttcgctggagcacggcgcgcacatcatcgtcggcactccggggcgtatc
cagcaacacttgcgcaaaggctcgctggtactggacggtctgaacaccctggtactggac
gaagctgaccgcatgctggacatgggcttctatgacgccatcgaagacatcattgtcaaa
accccggagcgtcgccagaccttgctgttctcggccacttacccggccggtatcaagcag
ctgtcgtccaagttcatgcgcaaccctcagcaggtaaaagcagaggcgctgcacactgac
agccaaatcgagcagcgtttctacgaaatctcgcctgaagagcgcatgagcgccgtgacc
aaggtactgggccacttccgcccgcagtcttgcgtggcgttctgcttcaccaagcagcag
gtgcaggaaaccgttgatcacctgacctccaagggcatttcggccgtcggcctgcacggc
gacctggagcagcgcgaccgtgaccaggtactggccatgtttgccaaccgttcgacttcg
gtactggttgccaccgacgtagccgcccgtggtctggacatcgacgcgctggacatggtg
ctcaacgttgagctggcccgcgattcggaaatccatattcaccgtgttggccgtaccggc
cgtgcgggcgaaaaaggcgtggccatcagcctggttgcaccgtccgaagcgcaccgcgcc
caggccatcgagcagttgcagaaagctccgctgaactgggaaaccctggacaccctcacc
tctcagggcggcgcaccgttgctgccggccatgagcacactggtgatcggcgcaggtcgt
aaagacaaggttcgcccaggcgatatccttggcgcactgaccggcgacgcaggcatcccg
ggtgcccaggttggcaagatcgccatctttgacttccaggcctacgtggcggttgaccgc
accattgccaagcaggctgcacagcgcctgagcgaaggcaaaatcaaaggccgcgtattg
cgcgtacgggttttgtaa
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