Pseudomonas bubulae: V6B39_05760
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Entry
V6B39_05760 CDS
T10711
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbub Pseudomonas bubulae
Pathway
pbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6B39_05760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbub03019
]
V6B39_05760
Enzymes [BR:
pbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V6B39_05760
Messenger RNA biogenesis [BR:
pbub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V6B39_05760
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WWR38940
LinkDB
All DBs
Position
1295132..1296985
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AA seq
617 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
EKLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACVFGGVGTN
PQVQALARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLRNPERIEVTPPNTTVERIEQRVFRLPATHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGTV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDSSTVEAEKPEVRERPDVRNPRNPPRGPRGDGPGNPGGGG
GRKDKGKEKSKEKPAAARSERPAREQKPREAQPAREQRQPTPRADANRAPDEFRDDDVDN
FGNRADYVSPYQNKNNQSRGRRPGAPAQGAGTGAAPAGRTGGRQNGPRTGSGASTGTPPA
KRSGPRSGAPRDGQARRENRPARDDARQEPAVKGPRENQPKIMHKESKSDRFPTPEQLDQ
LPNRPRGEKPALLTRNR
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccattgaagctgcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagacaggtactggtaaaaccggtggcttcgctcttccgattctg
gaaaagctgtttcccaatggccacccggacaaatcccagcgccacggcccacgccaacca
cgcgtgctggtcctgacgcctacccgcgaactcgccgcccaggtgcatgagagcttcaag
ctctatgcccgcgacctgaagttcgtgagcgcctgtgtttttggcggtgtgggtaccaac
ccgcaggttcaggccctggcccgtggtgttgacgtactggttgcctgccccggtcgtttg
ctcgacctggccggtcaaggcagtgttgacctgtcccacgttgaaatcctggtactcgac
gaagccgaccgtatgctcgacatgggctttgtccatgacgtgaaaaaagtcctcgctcgt
ctgccggccaagcgtcaaaacctgctgttttcggcgacgttctccaaggacatcaccgat
ctggctggcaagctgctgcgcaacccggaacgcatcgaagtaacgccaccgaacaccacg
gtcgagcgtatcgagcaacgcgtgttccgtctgcctgccacgcacaagcgtgccttgctg
gcgcacctgatcaccgctggcgcctgggaacaggttctggtcttcacccgtaccaagcac
ggtgcaaaccgcctggccgagtacctggacaagcacggcctcagcgctgtggccatccac
ggtaacaagagccagaacgcgcgcaccaaagccctggcagacttcaaggccggtaccgta
cgcattctggtagcgaccgacattgccgctcgtggcctggacatcgaccagctgccgcat
gtggtcaacttcgagctgccaaacgtcgacgaagattacgttcaccgtatcggccgtact
ggccgtgccggtcgttcgggcgaggcgatctcgctggtagcgccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaaacagaaaatcgccgatggcgacctgatgggtttt
gactcgagcacggttgaagctgaaaagcctgaagtacgcgagcgtccggatgtgcgtaac
ccgcgcaacccgccgcgcggcccgcgtggcgacggtccgggtaacccgggcggtggcggc
ggtcgtaaagacaagggcaaggaaaagagcaaagaaaagccggcagctgctcgcagcgag
cgtccagctcgtgagcaaaagccgcgcgaagctcagcctgcccgtgaacagcgtcagcca
accccgcgtgccgacgccaatcgtgcgccggacgagttccgtgatgacgatgtggataac
tttggtaaccgcgctgattacgtcagcccgtaccagaacaagaacaaccagagccgtggc
cgtcgcccgggggctccggcccagggcgcaggcactggcgctgcgccagcgggtcgtacc
ggtggccgtcagaacggtccgcgtaccggtagcggtgccagcactggcactccgcctgcc
aagcgcagcggtccacgcagtggcgctccgcgtgacggccaggcccgtcgcgaaaaccgc
ccggcccgtgacgatgcccgtcaagagccagcggttaaaggcccacgcgagaaccagccg
aagatcatgcacaaagagtcgaaaagcgatcgcttcccgacgcctgagcagctcgatcaa
ctgccgaaccgcccgcgtggcgagaagccagcgctgctgacgcgtaaccgctaa
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