Pseudomonas bubulae: V6B39_06070
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Entry
V6B39_06070 CDS
T10711
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pbub Pseudomonas bubulae
Pathway
pbub02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V6B39_06070 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbub03021
]
V6B39_06070 (rpoD)
Transcription machinery [BR:
pbub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V6B39_06070 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WWR38999
UniProt:
A0ABZ2H7X6
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All DBs
Position
complement(1367218..1369065)
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AA seq
615 aa
AA seq
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MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHES
APDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDTKVKAEGDDEEDDKEDSGEDEEEVESGPDPIIAAQRFGAVSDQMEIARKALKKH
GRGSKQAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARMP
RTDFLRLFPGNEVDESWSDALAKGKSKYAEAIGRLQPDIIRCQQKLSALEAETGLKIAEI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVE
SLKEATRDVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPTRSEHLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcaccctcggccgtgag
cagaagtatctgacttacgcagaggtcaacgaccacctgcccgaagatatttcagatccg
gagcaagtggaagacatcatccgcatgattaatgacatggggatccccgtacacgagagt
gctccggatgcggacgcccttatgttggccgatgccgacaccgacgaagcagcagctgaa
gaagcggctgcagcgttggcggcagtagagaccgacattggtcgtactaccgaccctgtg
cgcatgtatatgcgtgaaatgggcacggtagaactgctgacacgtgaaggcgaaatcgaa
atcgccaagcgtatcgaagaaggcatccgtgaagtgatgggcgcaatcgcgcacttccct
ggcacggttgaccatattctctccgagtacactcgcgtcaccaccgaaggtggccgcctg
tccgacgttctgagcggttatatcgacccggacgacggtattgcgccgcccgcagccgaa
gtacctcctcctgtcgacaccaaggtgaaagccgaaggtgatgacgaagaggacgacaag
gaagattccggcgaagacgaggaagaggtcgaaagcggccctgatccgatcatcgcggcc
cagcgctttggcgctgtttccgatcagatggaaatcgctcgcaaggccctgaaaaagcac
ggtcgcggcagcaagcaggcaattgccgagctggttgcactggctgagctgttcatgccg
atcaaactggttccgaagcaattcgaaggcctggttgagcgtgttcgcagcgccctggag
cgtctgcgtgcacaagagcgcgcaatcatgcagctgtgtgtacgtgatgcacgcatgccg
cgcaccgatttcctgcgcctgttcccgggcaacgaagtcgacgaaagctggagcgatgcg
ctggccaaaggcaaaagcaaatatgctgaagccattggtcgcctgcaaccggacatcatc
cgttgccagcaaaagctctctgctctggaagcagaaaccggcttgaagattgccgagatc
aaggacatcaaccgtcgcatgtcgatcggcgaggccaaggcccgccgcgcgaagaaagaa
atggttgaagccaacttgcgtctggtgatctccatcgccaagaagtacaccaaccgtggc
ctgcagttcctcgatctgatccaggaaggcaacatcggcttgatgaaagcggtagacaag
tttgaataccgccgcggctacaaattctcgacttatgccacctggtggatccgtcaggcg
atcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatcgag
acgatcaacaagctcaaccgtatttcccgtcagatgttgcaggaaatgggccgtgaaccg
accccggaagagctgggcgaacgcatggaaatgcctgaggataaaatccgcaaggtattg
aagatcgctaaagagccgatctccatggaaaccccgatcggtgatgacgaagactcccat
ctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgttgctaccgttgag
agccttaaagaagcgacacgcgacgtactcggcggcctcacagcccgtgaagccaaggta
ctgcgcatgcgtttcggtatcgacatgaataccgaccacacccttgaggaggttggtaaa
cagttcgacgtgacccgtgagcggattcgtcagatcgaagccaaggcgctgcgcaagctg
cgccacccgacgagaagcgagcatttgcgctccttcctcgacgagtga
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