Pseudomonas bubulae: V6B39_06375
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Entry
V6B39_06375 CDS
T10711
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pbub Pseudomonas bubulae
Pathway
pbub03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V6B39_06375 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbub03021
]
V6B39_06375 (rpoB)
03400 DNA repair and recombination proteins [BR:
pbub03400
]
V6B39_06375 (rpoB)
Enzymes [BR:
pbub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V6B39_06375 (rpoB)
Transcription machinery [BR:
pbub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V6B39_06375 (rpoB)
DNA repair and recombination proteins [BR:
pbub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V6B39_06375 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
WWR39053
LinkDB
All DBs
Position
1426357..1430430
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFHVQGES
ISLELVPQRLRGEIAAIDITDDKGKVIVEQGRRITARHINQLEKAGVKELVMPLDYVLGR
TTAKAIVHPATGEIIAECNTELTTEILAKVAKGQVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGYNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGRIAEGGAGLKKGQEITNEILDGLEHGQWFKLRMA
EDALNEQLEKAQAYIIDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPYDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINLMIEEQRKVADLRKFLHEIYNEIGGRQESLDDFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLRLADLPDSGQMVLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtatctcttggcaatccagctggattcgtatcgtgaattcttgcag
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcttgggc
gaaccggcatttgatgtcaaagaatgcgtgttgcgtggcgtaacgtacgccgtacctttg
cgggtaaaagttcgtttgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgaaaacggtaccttc
gtaatcaacggtaccgagcgtgtaattgtttcccagctgcaccgttccccgggcgtgttc
tttgaccacgaccgcggcaagacgcacagctccggtaagctgctttattccgcgcgtatc
attccttaccgtggttcgtggctcgatttcgagttcgacccgaaagactgcgtgttcgtg
cgtattgaccgtcgtcgcaagctgcctgcatcggtattgctgcgcgcgctgggttatacc
actgagcaagtgctggacgcgttctacaccaccaacgtgttccacgttcagggtgagagc
atcagcctggagctggttccacagcgtctgcgcggtgaaatcgcggccatcgatattacc
gatgacaaaggcaaggtgattgttgagcagggtcgtcgtatcactgcccgtcatatcaac
cagctggaaaaagccggtgtcaaagagctcgttatgcctctggactatgtcctgggtcgc
acaacggccaaggctatcgtgcatccggctactggcgaaatcattgctgagtgcaacacc
gagctgaccactgaaatcctggcaaaagttgccaagggccaggttgttcgcatcgaaacg
ttgtacaccaacgatatcgactgcggtccgttcgtctccgacacgctgaagatcgactcc
accagcaaccaactggaagcgctggtcgaaatctatcgcatgatgcgtccaggcgagccg
ccaaccaaagacgctgccgagactctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgttgtgcaaagaagacatcgttgccgtgctgaagaccctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgt
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagcctgtggctgcggcggtgaaagagttcttcggttccagccagctgtcccagttcatg
gaccagaacaaccctctgtccgagatcacccacaagcgccgtgtttctgcactgggcccg
ggcggtctgacgcgtgagcgtgcgggctttgaagttcgtgacgtacacccgactcactac
ggccgtgtttgccctattgagacgccggaaggtccgaacatcggtctgatcaactccctg
gctgcctatgcgcgcaccaaccagtacggcttcctcgagagcccgtaccgtgtagtgaaa
gacgcactggtaactgacgagatcgttttcctgtccgccatcgaagaagctgatcacgtg
atcgctcaggcctcggccacgatgaacgacaagaaagtgctgatcgacgagctggttgct
gttcgtcacttgaacgaattcaccgtcaaggcgccggaagacgtcaccttgatggacgtt
tcgccgaagcaggttgtttcggttgcagcgtcgctgatcccgttcctggaacacgatgac
gccaaccgtgcgttgatgggttccaacatgcagcgtcaagctgtaccaaccctgcgcgct
gacaagccgctggtaggtaccggcatggagcgtaacgtagctcgtgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgactctgttgatgccagccgtatcgtggttcgt
gttgctgatgacgaagttgaaactggcgaagccggtgtcgacatctacaacctgaccaaa
tacacccgttccaaccagaacacttgcatcaaccagcgtccgctggtgcgcaagggtgac
cgtgtacagcgtagcgacatcatggctgacggcccgtccaccgatatgggtgagctggcg
ctgggtcaaaacatgcgcatcgcgttcatggcctggaacggttacaacttcgaagactcc
atctgcttgtcggaacgagttgttcaagaagaccgctttaccacgatccacattcaggaa
ctgacctgtgtggcacgtgacaccaagcttgggcctgaagagatcactgcagacatccct
aacgtgggtgaagctgcactgaacaaactggacgaagccggtatcgtttacgtaggtgct
gaagttggcgccggcgacattctggtaggtaaggtcactccgaaaggcgagacccagctg
actccggaagagaagctgttgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acctccctgcgcgtacctaccggtaccaaaggtactgttatcgacgtgcaggtcttcacc
cgtgacggcgttgagcgtgatgctcgtgcactgtcgatcgagaagacccagctggacgag
atccgcaaggatctgaacgaagagttccgtatcgttgaaggcgctaccttcgaacgtctg
cgctctgctctggttggccgcattgccgaaggtggtgccggtctgaagaaaggtcaggaa
atcaccaatgaaatcctggacggtcttgagcatggtcagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagcttgaaaaggctcaggcttacatcatcgatcgccgtcgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgccgtcgcatccagccgggt
gacaagatggccggtcgtcacggtaacaagggtgtggtctccgtgatcatgccggttgaa
gacatgccgtacgatgccaatggcaccccggttgatgtggtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagattctcgaaactcacctgggcctcgcggccaaaggt
ctgggcgagaagatcaacctcatgattgaagaacaacgcaaggtcgctgacctgcgtaag
ttcctgcatgagatctacaacgaaattggcggtcgtcaagaaagcctggatgacttctcc
gatcaggaaatcctggatctggcgaagaaccttcgcggcggtgtgccaatggctaccccg
gtgttcgacggtgccaaggaaagcgaaatcaaggcaatgcttcgtttggcagacctgcca
gacagcggccagatggtgctgactgatggtcgtaccggcaacaagttcgagcgtccggtt
accgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcttacagcctggttacccagcagccgctgggtggtaaggcacagttc
ggtggtcagcgtttcggggagatggaggtctgggcgctggaagcctacggcgcggcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
