Pseudomonas bubulae: V6B39_06535
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Entry
V6B39_06535 CDS
T10711
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pbub Pseudomonas bubulae
Pathway
pbub03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V6B39_06535 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbub03021
]
V6B39_06535 (rpoA)
03400 DNA repair and recombination proteins [BR:
pbub03400
]
V6B39_06535 (rpoA)
Enzymes [BR:
pbub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V6B39_06535 (rpoA)
Transcription machinery [BR:
pbub03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V6B39_06535 (rpoA)
DNA repair and recombination proteins [BR:
pbub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V6B39_06535 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
WWR39085
LinkDB
All DBs
Position
1451667..1452668
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLSKKGSGVVTAADIQLDHD
VEIVNPDHVIANLASNGALNMKLTVARGRGYEPADSRQSDEDESRSIGRLQLDSSFSPVR
RIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VIEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgacacctcgccatattgatgtgcaagttgtcagt
ccaacccgcgctaaaatcactctcgagcctctcgagcgtggttttggccacaccctgggc
aacgcgctgcgccgcatcctgttgtcctcaatgccaggctgtgcagtagtcgaggccgag
attgacggtgtgctccacgagtacagcgccatcgaaggtgtacaggaagacgtaattgaa
atcctgttgaaccttaaaggtctggctatcaagctgcacggccgtgacgaagttacgctg
accttgtcgaagaagggttcgggggtggttaccgctgccgatattcagctggatcatgat
gtcgagatcgttaatcccgatcacgtaatcgccaacctggcgtctaacggcgccttgaac
atgaagctcaccgtagctcgtggtcgtggttatgaaccagcagactcgcgtcagagcgat
gaagacgaaagccgcagcattggtcgcttgcagctggattcttcgttcagcccggttcgc
cgtatcgcatacgtggtggaaaacgcccgtgtcgagcagcgcaccaacctggacaagctg
gttattgatctggaaaccaacggtacactggatcctgaagaggccattcgtcgtgctgca
accatcctgcaacagcagttggctgcattcgtcgacctcaaaggtgacagcgagccagtg
gtaatcgagcaggaagacgagatcgatccgatcctgcttcgtcctgttgacgatctggaa
ctgaccgtgcgttcggccaactgccttaaggcggagaacatttactacatcggtgacctg
attcagcgcaccgaagtagaactgttgaagactccgaacctgggcaagaaatccttgact
gaaatcaaggacgttctggcctcccgtggtctgtccctcggcatgcgcctcgacaactgg
ccgcctgcaagtcttaagaaggacgacaaggcgactgcctga
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