Pseudomonas bubulae: V6B39_06930
Help
Entry
V6B39_06930 CDS
T10711
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pbub Pseudomonas bubulae
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pbub03000
]
V6B39_06930
Transcription factors [BR:
pbub03000
]
Prokaryotic type
Helix-turn-helix
Other families
V6B39_06930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
PAS_4
AAA_5
PAS_9
AAA_2
Diguanyl_cycl_sensor
HTH_7
PAS_8
HTH_50
AAA
HTH_23
Mg_chelatase
HTH_30
RWP-RK
TIP49
Motif
Other DBs
NCBI-ProteinID:
WWR39161
UniProt:
A0ABZ2HB45
LinkDB
All DBs
Position
1543489..1545369
Genome browser
AA seq
626 aa
AA seq
DB search
MHSTDLRRHARQVIDVTRGRPQGCDPSIVRSWQRCLEDYHLDPAQTIAPTVLEQGRILEG
RERLQQVLKIAGHEMNSLHQQLSGAGHAVLLTDARGVILNCVTAPSERKVFEQAGLWLGA
DWSEAREGTNGIGTCLVERQALTIHQDEHFRGRHTGLTCSASPVFDPQGELLAVLDVSSA
RHEASRQSQFHTMALVNLSAKIIENSYFLGHFQNQWLLRFHLHAESVGLFSEGMLAFDGD
GVIGAVNQSALNLLGHVRGSLLGQSVDSVFDCPRDELFSRATLQANASWPLHTRDGRRLF
AALRGQPRNGPAPVMVQAEPPRPSSICLGDEALQTDFRRALRVFERDVPLLVNGETGSGK
EAFAKAVHQASLRSSKPFVALNCASIPESLIESELFGYRGGSFTGARKEGMQGKLQQADG
GTLFLDEIGDMPLALQTRLLRVLEDRVVVPIGGEPMAVNVRIISATHRNLQERVADGSFR
EDLYYRLNGLEIGLPALRERTDKSQLLDFLLAEEAGGQRLFISPAAREALLDFAWPGNVR
QLRNVLRTLAALCENDVIQYEDLPATIRLAPPKAPEACEYPLEDAEKQALLLALELHRWH
MTHTALQLGVSRNTLYRKLRKHGIER
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcacagcaccgatttgcgccgtcacgcacggcaagtcattgatgtcacccgcggtcgc
ccgcaagggtgtgacccgtccatcgtccgttcctggcagcgttgcctggaggactatcac
ctcgatcctgcgcaaaccatcgccccgaccgtacttgagcaaggccgtatccttgaaggc
cgcgagcgtttgcagcaggtgctgaaaattgccggtcacgaaatgaacagcctgcatcag
caactctccggtgccgggcacgcggtgctattgactgatgcccgtggcgtgatcctcaac
tgtgtcactgccccctccgaacgcaaggtgttcgagcaggcggggctttggctgggggcc
gactggagcgaagccagggagggtaccaacggcatcggtacctgcctggtcgagcgtcag
gcactgaccatccatcaggatgaacactttcgtggccggcacaccgggctgacctgctcg
gccagcccggtgttcgatccgcagggcgaattgctggcggtgctcgacgtgtcttcggcc
cgccatgaggcttcccgtcagagccagtttcatacgatggcgctggttaatctgtcagcg
aaaatcatcgaaaacagctacttcctcgggcactttcagaatcagtggctgctgcgtttt
catctgcacgccgagtctgtcggattgttcagcgaaggcatgctggcgtttgatggcgac
ggagttataggcgcggttaaccagagtgccctgaacctgctagggcatgtgcgtggcagt
ttgctcgggcaatcggtcgacagtgttttcgattgcccgcgggatgagcttttcagtcgg
gccaccctccaggcgaatgccagttggccgctgcatacccgcgacgggcgtcgattattt
gcggcactgcgcggccagccacggaacgggcctgccccggtcatggtgcaagccgagcca
ccgcgcccgagcagcatctgcctgggtgatgaggccctgcagacagattttcgccgggca
ttacgggtgtttgagcgcgatgtgccgctgctggtcaatggtgaaaccggctccggcaaa
gaagcctttgccaaggctgtgcatcaagccagcttgcgcagcagtaagccgtttgtggcg
ctcaactgcgcgtcgatccccgaaagcctgatcgagagcgaactgttcggctatcgcggt
ggcagttttaccggggcacgcaaggaaggcatgcagggcaagttgcagcaggccgatggc
ggcaccctgtttctggatgaaattggcgatatgccgctggcgttgcaaacccggttgtta
agagtgctggaggaccgtgtggtggtgcccattggtggcgagccgatggcggtcaacgtg
cgcattatcagcgccacccaccgtaacttgcaggagcgcgtggcggacggcagttttcgt
gaagacctgtattaccgccttaatggactggaaatcggtttgccagcgttgcgcgagcgc
acggacaaatcgcagttgctggacttcttgctggccgaagaggcgggagggcagcgcctg
tttatcagcccggcggcgcgtgaggcgttgctggattttgcctggccaggcaacgtgcgt
cagctgcgcaatgtgctgcgaaccctggctgcactctgcgaaaacgacgtgatccagtac
gaagatctgccggccactattcgcctggctccgcccaaagcccctgaagcatgtgaatac
ccgcttgaggatgccgaaaagcaggccttgttgctggcgctcgaactgcaccgctggcat
atgacccataccgcgctgcaactgggggtgagccgcaacaccctgtatagaaagctgcgc
aagcatgggattgagcggtaa
DBGET
integrated database retrieval system
