Pseudomonas bubulae: V6B39_07250
Help
Entry
V6B39_07250 CDS
T10711
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pbub Pseudomonas bubulae
Pathway
pbub03420
Nucleotide excision repair
pbub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V6B39_07250
03430 Mismatch repair
V6B39_07250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbub03400
]
V6B39_07250
Enzymes [BR:
pbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6B39_07250
DNA repair and recombination proteins [BR:
pbub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V6B39_07250
MMR (mismatch excision repair)
Other MMR factors
V6B39_07250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
AAA_11
DEAD
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
WWR39222
LinkDB
All DBs
Position
complement(1611792..1613576)
Genome browser
AA seq
594 aa
AA seq
DB search
MFAWDSRELNAEQSAAIEEPSSVFLIACPGSGKTRTLTYKIAYELSRATDKRIVVAITYT
HRAADEIQERIEGLGVDTSKLWIGTIHSFCLEWIIKPYGIYLPELSRGYRVLDRHDRELM
LDRLCAPYPKITHWDCDYYFSKTGYHLGCKDAWKHETLHKILGEYFRELGEARQIDFELI
LWYAQVLMSDQKHIASILASVFSYVLVDEYQDTKQIQYGLLTAILRAGAGRTKTFIVGDP
NQAIYGSLGGYAVPVADFRAEAGIPIREMALTRNYRSSNRIISHFSNFSVYPTSIESAGS
DASFPSKVSYNQHVTLTNLHDELVRLIQASLAAGHPPEEICVLAPWWILLASTTRHLVRM
LPDQQFDGPGLVPFSNDIDNFWFKVSKIILTESSPKMLVRRMRWARDVISDLGDLGVDTS
RLTQRLLLRECNSISISEMDGIAYLDQAFTALLERLGVALHSFPALMEHRDAFFRSSLSR
IDRLQKDGAPYINDISFFRKVFRERTGITVSTIHGVKGAEYDVVIAFGLLQGMVPHFTEA
ASLDAANKLLYVVGSRARKNLHLISESGRPQGHYGHYAATEALFTCVFDYDAAE
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcctgggattcccgtgaattgaacgccgagcagtctgccgcaatcgaggagcct
tcgagcgtattcctcatcgcatgccctgggagcggaaaaacgcggacgttgacctataag
atcgcttatgagctttcgcgggccacggacaagcggattgtcgtggcgattacttatacg
caccgcgcagcagatgaaattcaggagcgcattgaaggtctcggtgttgacacgtcaaag
ctgtggatcgggaccattcactcattttgcctcgagtggatcattaagccatatggcatc
taccttccagagctttcccgcggctatcgagtcctagacagacacgaccgcgaactcatg
ctcgataggctatgcgcgccctacccaaagatcacgcactgggattgcgattattacttc
agcaaaacgggctatcacctaggatgcaaagatgcttggaagcatgaaacgctacataaa
attcttggtgagtattttcgcgagctcggcgaagcgcgtcagatcgatttcgagctgatc
ctttggtatgcgcaggtcctgatgagtgatcaaaagcatattgcatcaattctcgcttcg
gtcttctcatatgttctggtagacgagtatcaggacacgaaacaaattcaatatggcctt
cttaccgctattttgcgtgccggagcggggcgaacgaagaccttcatcgtaggcgatcca
aaccaagctatctacggctcgcttggtggctacgcagttccggtggctgattttcgtgcc
gaagctggaatcccgataagagaaatggcgcttacccggaattaccgttcgagtaatagg
atcatttcccacttctcgaatttcagcgtttatccgacatcaatcgagagcgcgggatcg
gatgcgtcgtttccaagcaaggtttcgtacaaccagcacgtaacactcaccaatttgcat
gacgagctagtacgactgatccaagcaagccttgctgccgggcatcctcctgaggagatc
tgcgtgctcgccccatggtggattttattggcatcgacgacgcggcatctagtaaggatg
cttccggatcagcagtttgacggccctggtctagtcccctttagtaacgatatagacaac
ttctggttcaaggtttcgaaaatcatcctgactgagtcatcgccgaagatgcttgttcgt
cgcatgcgatgggccagagatgtgatcagcgacctgggtgatttgggcgttgatacatcg
cgcctgacacagcggctcctattgagggaatgcaactcaatttcaatctccgaaatggat
gggattgcctaccttgaccaagccttcaccgcgctgcttgaacgactcggggtagccctt
catagcttccccgcattaatggagcaccgcgatgcgttctttcgcagctcactatctcgg
atcgacaggctccaaaaggacggggccccgtacatcaacgatatctctttcttcaggaag
gtatttcgcgagcggactggtatcaccgtttcgacgatccacggggtaaaaggtgccgag
tacgatgtggtcatcgcgttcggccttcttcaggggatggtgcctcatttcaccgaggca
gcaagcctggatgccgcgaacaagctcctctacgtcgtaggttcccgtgcccgcaagaat
ctacatttgatttctgagagcggacgcccccaagggcactatgggcactatgcggctaca
gaggcactgttcacatgtgtctttgactacgacgcagccgagtag
DBGET
integrated database retrieval system
