Pseudomonas bubulae: V6B39_07955
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Entry
V6B39_07955 CDS
T10711
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
pbub Pseudomonas bubulae
Pathway
pbub03410
Base excision repair
Brite
Enzymes [BR:
pbub01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
V6B39_07955
Transcription factors [BR:
pbub03000
]
Prokaryotic type
Helix-turn-helix
AraC family
V6B39_07955
DNA repair and recombination proteins [BR:
pbub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
V6B39_07955
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WWR39348
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Position
1761753..1763243
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AA seq
496 aa
AA seq
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MNTDNRLSTPSTAACEIARLSRDARFDGVFFTAVLSTRIYCRPVCPARAPKAENVVYYPS
AAAAQAQGFRPCLRCRPELAPGNQLWLQGEHLVSRALTLINEGYLAEHSLEELAERMDIG
ARQLRRLFVHYLGAPPMAVHSTRRLLFAKQLLTETDLSITEVAMASGFGSLRRFNAAFAE
ANHAEPRAFRRSPKTRADKALVLRLGYRPPYDFAALLGFLQTRALPGIERVDGHSYQRVF
GSPEAPGWLRVSAWPGEQHALQLELRNVPPGQMLAVVTRIRRMFDLDADPLAIAGTLSAS
PLLAPVIGRYPGLRLPGGWDGFEVAVRAVLGQQVSVAAARTLASRIVQRHGVAIEADKGS
GLDRLFPGPEQLAQADLGQMGITQARINTIQGIARALAQGRVDFAVEQPLERFIERWVQL
PGIGEWTAHYIAMRVLKHPDAFPAADLILRREANPQGEPLSTKALQALAESWRPWRAYSV
MYLWRAATDSITARKV
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagataaccgcctgtcaacgcccagtaccgctgcctgcgaaatcgctcgcctg
agccgtgatgcgcggtttgacggggtgtttttcactgccgtactcagcacccggatctac
tgccgccccgtgtgtccggcccgtgcgccaaaagccgaaaacgtggtttattaccccagc
gcggcagcggctcaggcccaaggctttcgcccctgtttgcgttgtcggcccgagctggca
ccgggtaatcagctttggttgcagggcgagcatctggtgtcgcgcgccttgacgctgatt
aatgagggttacctggcagagcactcgctggaagagttggctgagcgcatggacatcggt
gcgcggcaattgcgtcgtctgtttgttcactatctcggggcgccgccgatggccgtgcat
tccacccggcgcctgctttttgccaagcaactattgaccgaaaccgacctgtcgatcact
gaagtggcaatggcttccggctttggtagtctgcgtcgtttcaatgcggcttttgccgaa
gccaatcatgccgagccccgtgccttcaggcgcagcccgaagacacgggcagacaaggcg
ctggtgttgcgcctgggctatcgcccgccttacgactttgcagccttgctgggctttctg
cagacccgggccttgcccggtatcgaacgggtcgatggccacagttatcagcgggtgttt
ggcagccctgaagctcccggctggctgagggtcagcgcctggccgggtgagcagcatgca
ttgcagctggagctgcgcaatgtgccaccggggcagatgctggcggtggtcacgcggatt
cggcgcatgttcgatctggatgccgacccgctggccatcgccggtaccttgagtgccagc
ccgctgctggcgcctgtgatcgggcgttatccggggctgcgattgccggggggctgggac
ggttttgaagtggcggtgcgggccgtgctggggcagcaagtcagtgtggctgcagcacgc
accctggccagtcgaatcgtgcagcgccatggtgttgccattgaagccgacaagggctcg
gggctggatcgtctgtttcccggccctgagcagctggcccaagccgatcttgggcaaatg
ggcataacccaggcgcgcatcaatacgatccagggcatcgcccgcgcccttgcacaaggg
cgtgtcgacttcgccgtggagcaacccctggagcgttttatcgagcgctgggtacaactg
cccggtattggcgaatggaccgcgcattacatcgccatgcgcgtgctcaaacacccagat
gcatttccggccgccgatctgattctgcgccgtgaagccaacccccagggtgagccgtta
agtaccaaagcgctgcaggcactggctgaaagctggcgcccgtggcgggcctattccgtg
atgtatttatggcgcgcagctaccgattcgattacagcgcgcaaggtgtga
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