Pseudomonas bubulae: V6B39_10550
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Entry
V6B39_10550 CDS
T10711
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pbub Pseudomonas bubulae
Pathway
pbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6B39_10550 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbub03019
]
V6B39_10550 (rne)
03009 Ribosome biogenesis [BR:
pbub03009
]
V6B39_10550 (rne)
Enzymes [BR:
pbub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
V6B39_10550 (rne)
Messenger RNA biogenesis [BR:
pbub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V6B39_10550 (rne)
Ribosome biogenesis [BR:
pbub03009
]
Prokaryotic type
rRNA processing factors
V6B39_10550 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
WWR39825
LinkDB
All DBs
Position
complement(2318387..2321650)
Genome browser
AA seq
1087 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHTNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPPRTSAPVPTEAA
AAAAPAPAPAATIAEPSLFKGLVKSLVSLFASKEEPAAPTVVEKPATPERPARNEERRNG
RQQSRNRNGRRDEERKPREERAPREERAAREPREERSPREETPVVAQTPREERAPRPPRE
ERAPRAPREDRKPRGEREERVRELREPLDAAPAVAAVAATTAVAEERPARQPREERQPRA
PREERAPREEQVVAAAEDEEVLNGEEQSQDETQDNAEGDRPRRRSRGQRRRSNRRERQRD
ANGNVIEGSEENSEEGNSQNAPATTSETAVVAVTETVASQVVSAPAEAQAHQQAERATEV
AQESAPVETVAVVEADKEIVAVETPAAQAPAVETAGEAATKVEAVAAQAPTTETPVVETP
VVEAPVVEAPTVEAVTPIEAVKAPEVEVAPAQEAQPEVQAVAQPVAATPEPVVEAVLEAP
AVETPVIEKAPHAREARVVRAPVAEPAVTEAVAEPVAAPEVVTVEAAVETIVAVEPAPVE
TVVTTEVVEVVVAATPVVSAPSNGRAPNDPREVRRRKREEAAAAAAAQATAHEGVAQEKA
HEDKPLA
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacctgaagagttgcgcgttgcactggtagatggccaacgc
ctctacgacctggacatcgagtcgggtgctcgcgagcagaagaaagccaacatctataaa
ggccgtattactcgcatcgaaccaagccttgaggctgcctttgtcgatttcggctccgag
cgccacggcttcctgcccctcaaagaaatctcccgcgagtacttcaagaaagcccctgaa
ggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtgcaggtcgaa
aaagaagagcgcggcaacaagggcgcagccctgaccacgtttatcagcctcgccggccgc
tacctggtcctgatgccgaacaacccgcgtgcaggcggtatctcccgccgcatcgaaggt
gaagagcgcaacgaactgcgtgaagcgctgaacggcctgatcgctcctgccgacatgggc
ctgatcgttcgcactgccggccttggccgcagcagtgaagaaatgcagtgggacctcgat
tacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgcgccgcacccttc
ctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgactacctgcgccaggac
atcggcgaagtcctgatcgacagcgttgaagcccaggacgaagccctgacctttatccgc
caggtgatgccgcagtacgccagcaaaatcaaactctacgaagacagcgttccgctgttc
aaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtcgttgaactgcct
tccggcggctccatcgttatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gcccgcgccaccaaaggcagcgatatcgaagaaaccgcactgcaaaccaaccttgaagcg
gcggaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatcgtcatcgac
ttcatcgacatgaccccggccaaaaaccagcgcgcagtggaagaaaaagtccgcgaatgc
ctggaagccgaccgcgcccgcgtacaagtgggtcgtatctcgcgcttcggcctgctggaa
atgtcccgtcagcgtctgcgcccatccctgggtgaaagcagcggcatcgtttgcccgcgc
tgcaacggcaccggcatcatccgtgatgttgaatcgctgtcgctggcgatcctgcgcctg
atcgaagaagaagccctgaaggaccgcactgccgaagtccgcgcccaggtgccaatcccg
gttgcagcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgtacc
cgtgcccgcatcgtcattctgccgaacgaccacctcgaaacgccgcacttcgaagttcag
cgtctgcgtgatgacagcccggaagcccacaccaaccagtccagctatgaaatcgctgcc
gctgccgctgaagtggaagaagttcaaccggctgctgccacccgcaccctggttcgccag
gaagccgccgttaaaacagcaccgccacgcacctcggcaccggttccgaccgaagccgct
gctgctgccgcacctgctcctgcaccggcggccaccatcgccgagccaagcctgttcaag
ggcctggtcaagtcgctggtaagcctgtttgcctccaaggaagagcctgcagcaccgacc
gtagtcgagaagccggcaacccctgagcgccctgcacgcaacgaagaacgtcgcaacggt
cgccagcagagccgtaaccgcaacggtcgtcgtgacgaagaacgtaaaccgcgcgaagag
cgtgctccacgtgaagagcgtgccgctcgcgaaccacgcgaagagcgcagccctcgcgaa
gaaactccggttgtggctcaaactcctcgcgaagagcgcgcaccgcgcccaccgcgcgaa
gaacgtgcgccgcgtgcaccacgtgaagaccgcaagccgcgtggcgaacgcgaagagcgc
gtacgtgaactgcgcgagcctctggatgcagcaccagccgtagccgctgtggccgctacc
actgctgtagctgaagagcgcccagcccgtcagccgcgtgaagagcgccagccgcgcgca
cctcgcgaagaacgtgcgccacgcgaagagcaggttgtagctgccgctgaagacgaagaa
gtgctgaacggtgaagagcagtcccaggacgagacccaggacaacgccgaaggcgatcgt
ccacgtcgtcgctcccgtggccagcgtcgtcgcagcaaccgccgcgagcgtcagcgtgac
gccaacggcaacgtgattgaaggctcggaagagaacagcgaagaaggcaacagccagaac
gctcctgcaaccacctctgaaacagccgtcgtggccgtgactgaaaccgttgccagccag
gtcgtcagcgctcctgctgaagcccaggcgcaccagcaggcagaacgcgcaacagaagtg
gcccaggaatcggccccggttgaaaccgtggccgtcgttgaagctgacaaggaaattgtg
gctgtcgaaacacctgcggcccaggccccagctgttgaaaccgctggcgaagcagcaacc
aaagtagaagcagtcgctgcccaggcaccgaccactgaaacgcctgttgttgaaactcca
gtagtagaagcaccggtagtagaagcgccaacagtagaagcagtgacgccgatcgaagcc
gtcaaggcgcctgaagttgaagttgcaccagctcaagaagcacagcctgaagtccaggcc
gttgcccagccggttgcagcgactccagagccagtggttgaagccgtgttggaagcacca
gcggtcgaaactccggttatcgaaaaagcaccgcatgcccgcgaagcccgcgttgtgcgc
gcgccagtagcagagcctgccgttactgaagccgtagcagagcctgttgccgcacctgaa
gtggtaaccgttgaagccgcggtcgaaacgatagtagccgtagagccggcccccgttgag
actgttgtgacaactgaagtggttgaggtagtggttgcagcaactccggttgtcagcgcc
ccaagcaacggtcgcgcacctaacgacccgcgtgaagtacgtcgccgcaagcgtgaagag
gcagctgctgcagcggccgctcaggcaactgcgcatgaaggcgtagcccaggaaaaggca
cacgaggataaacccctcgcctaa
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