Pseudomonas bubulae: V6B39_13140
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Entry
V6B39_13140 CDS
T10711
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
pbub Pseudomonas bubulae
Pathway
pbub00541
Biosynthesis of various nucleotide sugars
pbub01100
Metabolic pathways
pbub01250
Biosynthesis of nucleotide sugars
Module
pbub_M00064
ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
V6B39_13140 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
pbub01005
]
V6B39_13140 (rfaD)
Enzymes [BR:
pbub01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
V6B39_13140 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
pbub01005
]
Core region
V6B39_13140 (rfaD)
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
KR
Polysacc_synt_2
DapB_N
Motif
Other DBs
NCBI-ProteinID:
WWR35946
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Position
2882537..2883526
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AA seq
329 aa
AA seq
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MSIIVTGAAGFIGSNLVKALNRRGERDIIAVDDLTDGDKCRNLADCDIADYFDKREFVQR
FTTHQLGEVRAVLHQGACSSTVESDGRLMMDNNYRYSCDLLQACQEQSVPLLYASSAAVY
GAKREFREAREYEQPLNVYAYSKFLFDQRVRQLLPRTRSQIVGLRYFNVYGPREQHKGRM
ASMVWHCFNQYRDHGHVELFGEYGGYPAGGHERDFVSVEDVVKVNLHWLDHPQTSGVFNL
GTGCARSFNDLALATINSVRAAEDRPPLTLETALLDGVLRYCEFPDGLKHKYQVYTCADL
GQLREAGYREPMLGLEEGVQGYCAELLAS
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcatcgtgaccggagctgccgggtttatcggcagcaatctggtgaaggccctg
aaccgacgcggcgagcgcgacatcatcgccgtcgacgatctgactgacggcgacaagtgc
cgcaatctagcagactgcgatatcgctgattacttcgacaagcgtgaattcgtacagcgc
tttacgacccatcaactgggcgaagtgcgtgccgtgctgcatcagggcgcctgttccagt
acggtagaaagtgatggccggttgatgatggacaacaactaccgttacagctgcgacctg
ctgcaagcctgtcaggaacagtcggtacctttgctgtatgcctcttcggcggcggtctac
ggcgcgaaacgggagtttcgtgaagcccgcgagtacgagcagcctctgaatgtctatgcc
tactccaaattcctcttcgaccagcgggtacgccagttgctgcccaggacgcgcagccag
attgtgggcttgcgctacttcaatgtgtacggcccccgcgaacagcataaagggcgcatg
gcttcgatggtctggcactgttttaaccagtatcgcgatcatggccatgtcgagttgttt
ggcgagtacggcggctacccggcgggcgggcatgagcgcgattttgtctctgtggaggat
gtggtcaaggtcaatctgcattggctggaccatccgcaaaccagtggtgttttcaacctg
ggcactgggtgcgcgcggtcattcaatgacctggcactggcgactatcaacagtgtacgc
gctgccgaggacaggccgcccctgacccttgagacggccttgctggacggagtgttgcgg
tattgcgagttccctgacgggctcaagcacaagtatcaggtgtacacctgcgccgacctc
gggcagttgcgcgaagcggggtatcgcgagccaatgctggggctggaggagggcgtgcag
ggctattgtgcagagcttcttgcatcttag
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