Pseudomonas bubulae: V6B39_16930
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Entry
V6B39_16930 CDS
T10711
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
pbub Pseudomonas bubulae
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pbub01002
]
V6B39_16930
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pbub01011
]
V6B39_16930
Peptidases and inhibitors [BR:
pbub01002
]
Cysteine peptidases
Family C82
V6B39_16930
Peptidoglycan biosynthesis and degradation proteins [BR:
pbub01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
V6B39_16930
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
WWR36656
UniProt:
A0ABZ2H4A4
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All DBs
Position
complement(3771831..3773390)
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AA seq
519 aa
AA seq
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MFKKRAFYLSIALLTVPLVAVADPLQADTTSPVQQALSQLPQACPVLAPRVNAPMLRMLQ
GFYQGQNDQPVWSVNGRLSALQGELAQLADDGLDPDTYKLPVAGDLCADIGISQQYLQAL
QDLHYGRLQQSRFEPVWHASEVAQDRQARILAFAGPGLADLPRAFEQARPQNELYQNLRR
VYARQRQQPLPQWQPLASGPLLRPGAEDARVPELARRLVSEGYLSHLPATVDHHYSNELV
AAVKSFQLDHSLQADGVIGAGTLKELNISPQARREQLRINLERFRWIAQDLEPDILLVNV
PAAQLTVYRNGVPVWQTRTQVGRAERQTPLLKSRVNRLTLNPTWTIPPTIFREDKLPQIR
RDPSFLSRQDLQIVDSNGQPLAAQDIDWDRPGNILLRQGAGPRNPLGRIAIRFPNPFSVY
LHDTPSQALFSKGPRAFSSGCVRVEAVFQLRDLLVTPAEKVRSEELLGTGLTHEFRLSNP
TPILMTYWTAQANKDGKVTYAPDIYNHDPALIAALASKK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
ttgttcaaaaaacgcgcattttacttgagcattgccttgctgactgtgccactggtcgct
gtagccgatcccctacaggcagacaccacaagcccggtacaacaagcgctcagccaactg
ccgcaagcctgtccggtcctggcgccacgggtcaatgcaccgatgctgcgaatgctgcag
gggttttatcaggggcagaatgaccagccggtatggtcggtcaatggccgtttgagcgcc
ctgcaaggggagcttgcgcagttggcggatgacggtctggaccccgacacctacaaactg
cctgtcgctggtgatctgtgtgccgatatcgggatcagccagcagtatctgcaagccttg
caggacctgcactatggtcgcctgcagcagtcgcggttcgagccggtatggcatgccagt
gaggttgcacaagaccgccaggcccgcatcctggcctttgccggcccgggcctggcggac
ttgccccgggcttttgaacaggcgcgcccgcaaaacgagctgtatcaaaacctgcgtcgg
gtctatgcccgccagcgtcagcaacccttgccacaatggcaaccactggccagcgggccg
ttgctgcgtccgggggctgaggatgcgcgggtgcccgagctggcccggcgactggtcagt
gaaggctacctcagccacctgccggcgactgtcgatcaccattacagcaatgaactggtg
gcggcggtgaagagcttccagctcgaccattcgttgcaggccgacggtgtaatcggcgcg
ggcacccttaaagaactcaacatcagcccccaggcgcggcgtgagcagctgcgcatcaat
ctggagcgctttcgctggatagcccaggatctggagcccgatatcctgctggtcaatgtg
cccgcagcgcaacttaccgtgtaccgcaacggtgtgccggtgtggcagacacgcacccag
gtcggtcgtgccgagcgccagaccccgctgctcaagtcccgggtcaatcgccttacgctc
aacccgacctggaccattccgccgaccatctttcgtgaagacaaactgccgcagatccgt
cgcgacccgtctttcctcagccgtcaggacctgcagattgtggacagcaacggccagccg
ctggcggctcaggatatcgactgggatcgaccgggcaacatcctgctgcgccagggcgcg
gggccgaggaacccgttgggccgtattgccatccgcttccccaatccgttctcggtgtac
ctccacgacacccctagccaggccttgttcagcaaggggccacgggctttcagttcgggt
tgcgtgcgggttgaagcggtgttccagctgcgtgacttgctggtgacacctgccgaaaaa
gtccgtagcgaggagctgttgggtaccgggctgacccatgagttcaggctgtcgaacccg
acaccgatcctgatgacctactggaccgcccaggcaaacaaggacggcaaggtgacctat
gcaccggatatctacaatcatgacccggcattgattgcggcactggccagcaaaaaataa
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