Pseudomonas bubulae: V6B39_19350
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Entry
V6B39_19350 CDS
T10711
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
pbub Pseudomonas bubulae
Pathway
pbub02020
Two-component system
pbub02025
Biofilm formation - Pseudomonas aeruginosa
pbub02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
V6B39_19350
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
V6B39_19350
09142 Cell motility
02040 Flagellar assembly
V6B39_19350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pbub03000
]
V6B39_19350
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pbub02035
]
V6B39_19350
Transcription factors [BR:
pbub03000
]
Prokaryotic type
Helix-turn-helix
Other families
V6B39_19350
Bacterial motility proteins [BR:
pbub02035
]
Flagellar system
Flagellar assembly proteins
Others
V6B39_19350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
HTH_50
GAAD
AAA_7
nSTAND3
AAA_22
bpMoxR
AAA
DUF5788
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WWR37103
LinkDB
All DBs
Position
complement(4261022..4262503)
Genome browser
AA seq
493 aa
AA seq
DB search
MWRETKILLIDDDSVRRRDLAVILNFLGEENLTSPSHEWEQAVSALPSSREVLCVLVGTV
STAGGLSGLLKTLAAWDEFLPIMLLGEVSSLDLPEDQRRRVLSSLEMPPSYSKLLDSLHR
AQVYREMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGK
EVVARNLHYHSKRRDAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG
TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQCADVRIIAATHKNLESMIEVGAFR
EDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHAWPG
NVRELANLVERMAIMHPYGVIGVVELPKKFRYVDDEDEQLVDSLRSDMEERVAINNATTD
FVASANAMLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKY
GMSRREGEEQADD
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgtgaaaccaaaatcctgctgatcgatgacgatagcgtccgccgccgtgatttg
gcggtgatcctgaattttcttggcgaagaaaatctgaccagccccagccacgaatgggag
caggctgtcagtgccttgccgtccagtcgcgaagtgctttgcgtgctggtcggcaccgtg
agtactgccggtggcttatcaggactgcttaagacactggccgcgtgggatgagttcctg
ccgatcatgcttttaggtgaagtttcttctctcgacctgcctgaagaccagcgccgccgg
gtgttgtccagcctcgaaatgccccccagctacagcaaattgcttgattccctgcaccgt
gcccaggtctatcgcgagatgtatgaccaggcccgcgagcgcggccgtcatcgtgagccc
aacctgttccgcagcctggtcggtaccagcagggcgatccagcatgtgcgccagatgatg
cagcaagtggccgataccgatgccagcgtgctgatcctcggcgagtccggcaccggcaag
gaagtggtggcgcgcaatctgcattaccattccaagcgtcgcgatgcgccgtttgtgccg
gtcaactgtggggcgattcctgccgagctgctggaaagcgagctgtttggccatgagaag
ggcgcctttaccggggccatcaccagtcgtgccgggcgttttgaactggccaatggcggc
acgctgttcctcgacgaaatcggcgatatgccgctgccgatgcaggtcaagctgttgcgt
gtgttgcaggaacgtacatttgagcgtgtgggcagcaacaagacccagtgtgccgatgtg
cggatcattgccgccacccacaaaaaccttgaaagcatgattgaagtcggcgccttccgc
gaagacctgtactaccgcctcaacgtattcccgattgaaatggcaccgctgcgtgagcgg
gtcgaagatattccgttgctgatgaacgagctgatttcgcgcatggagcacgaaaaacgc
ggttcgatccgcttcaattccgccgccatcatgtcgttgtgccgtcatgcatggccgggc
aacgttcgcgagctggccaacctggtggagcgcatggcgatcatgcatccgtacggggtg
attggcgttgttgagctgccgaaaaaattccgctacgtggatgacgaggacgagcaactg
gtcgacagcctgcgcagcgatatggaagagcgtgtggcgatcaacaatgccacaacggac
ttcgtggccagcgccaatgcgatgctgccgccggaaggcctggacctcaaggactacctg
ggcgggctggagcagggtttgatccagcaggcactggatgacgccaacggcatcgttgcg
cgggcggcagagcgtctgcggattcgtcgtaccaccctggtggaaaaaatgcgcaagtac
ggcatgagccgtcgcgaaggtgaagagcaggcggatgattga
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