Pseudomonas bubulae: V6B39_21865
Help
Entry
V6B39_21865 CDS
T10711
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pbub Pseudomonas bubulae
Pathway
pbub03030
DNA replication
pbub03430
Mismatch repair
pbub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V6B39_21865 (dnaE)
03430 Mismatch repair
V6B39_21865 (dnaE)
03440 Homologous recombination
V6B39_21865 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbub03032
]
V6B39_21865 (dnaE)
03400 DNA repair and recombination proteins [BR:
pbub03400
]
V6B39_21865 (dnaE)
Enzymes [BR:
pbub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V6B39_21865 (dnaE)
DNA replication proteins [BR:
pbub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V6B39_21865 (dnaE)
DNA repair and recombination proteins [BR:
pbub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V6B39_21865 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WWR37570
LinkDB
All DBs
Position
complement(4808026..4811547)
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLIKTLAGMNMPAVAVTDQNNMCSLVKFYKAAMGGG
IKPISGADLWLSNKDPENPLSRISLLAMNPLGYRNLTELISRGYIDGQRNGQVIIEREWV
AEAADGLIMLSAAKEGEIGVALISGNTEEAETLAREWMTVFPDRFYIEVQRTKRPNDEEH
LHAAVALADKIGAPLVATNDVRFIRQQDFEAHETRVCIGEGRALDDPRRSKNYSDQQYLK
SAEEMAELFSDLPDALANTVEIAKRCNIEVKLGTHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYDTKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAFEQE
EILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLV
TQFDKDDVESAGLVKFDFLGLRTLTVIDWALKTINRDRAKVDEPPLDIAFIPLDDKPTYQ
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCANNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVILIEEIRSMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPFFHDEP
KAWQANIDQNRAVLLSALEEAIKAAEQTARTHDSGHADLFGGLFVEADADVYAHHRKARE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSARIEASLFAEAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTSLAESLRLKVNRDALKGDQLRNLGELLKKHRGACPVTMEYTGEEAKAM
LQFGETWRIDPADSLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctgcgcctgcacactgaatactccctggtcgatggcctg
gtgcggatcaaaccgctgatcaaaactctggccggcatgaatatgcccgctgtcgcggtg
accgatcagaacaacatgtgctccctggtcaagttctacaaggcggccatgggcggcggc
atcaagccgatcagtggtgcagacctgtggctgtcgaacaaggaccctgaaaaccccctc
agccgtatcagcctgttggcgatgaacccgttgggctatcgcaacctgaccgagctgatc
tcccgtggttacatcgatggccagcgcaatggccaggtcatcatcgagcgcgagtgggta
gccgaggccgccgatggcctgatcatgctgtcggctgcgaaagagggcgagatcggtgtc
gcgctgatcagtggcaacactgaagaagccgagaccctggcccgagaatggatgacggtg
ttccctgaccgcttctatatcgaagtgcagcgtaccaagcgtcccaatgacgaagagcat
ctgcatgcggctgtggccctggcagacaagatcggcgcgccgctggtggcaaccaacgat
gtgcgctttatcaggcaacaggactttgaggctcacgaaacccgcgtctgcattggtgag
ggccgggcactggacgacccgcgtcgctccaagaattacagcgatcagcagtatctgaaa
agcgccgaggaaatggccgagctgttcagtgacttgcctgatgctttggcaaacacggtt
gaaattgccaaacgctgcaatatcgaagtaaagctgggcactcactttttgcccaacttc
ccgatccctgatggcatgaccatcgatgaatatttccgcaaggtgtcatttgacggcctg
gaagagcgcctgagcgttctgctgcccaaagacaccaccgaggattacgacaccaagcgt
caggtgtatgtcgaccggctgaatttcgaactggatatcatcatccagatggggttcccg
ggttacttcctgatcgtgatggactttattcagtgggccaagagcaatggcgtaccggta
ggaccgggccgggggtcgggtgccggctcgctggtggcctatgtacagaagatcaccgac
cttgatccgctggaatacgacctcctgttcgaacgattccttaacccggaacgggtatcg
atgcccgacttcgacgtcgacttctgcatggatggtcgcgaccgggtaatcgagtatgtg
gccgaaaaatacggacgcaacgcggtaagccagatcatcactttcggttcgatggccgcc
aaggcggtaatccgtgacgtggcgcgggtgcagggcaagtcctacggcctggcggatcgt
ctgtcgaagatgattccgtttgaagtcggtatgaccctggaaaaagccttcgagcaggag
gaaatcctgcgcgactttatcaaggtcgacgaagaagcggccgaaatctgggaaatggcc
cgcaagcttgaaggcgttgtacgtaacgtcggcaagcacgccggtggtgtggtgatcgca
ccgaccaaactgactgacttctcgccgatttactgcgacgaagagggtggtggtctggtt
acccagttcgacaaggatgacgttgagtctgctggcctggtgaagttcgacttcctcggt
ctgcggaccctgacagtgatcgactgggcgttgaagaccatcaaccgcgatcgcgccaag
gtcgacgagccgccgctggatatcgcctttatcccgctggacgacaagccgacctaccag
ttgctgcaaaaggccgaaaccaccgcggtgttccagctcgagtcgcgcggtatgaaagag
ctgatcaaaaagctcaaacccgactgcctggaagacttgatcgcactggtggccctgttc
cgtccggggccgctgcagtcaggcatggttgatgactttatcaaccgtaagcacggccgt
gccgaactggcgtacccgcactccgattatcagtacgaaggcctcaagccggtattggca
cccacttacggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtcatggcc
gggtataccctcggcggcgctgacatgctgcgtcgggccatgggtaagaaaaaacctgaa
gaaatggccaagcagcgcggtggctttattgaaggttgcgccaataacaatattgacgct
gacctggccggtaacattttcgacctggtggaaaaattcgccggttacggtttcaacaaa
tcccactccgctgcctacggcctggtgtcgtaccagaccgcctggctgaaaacccactac
ccggcgccatttatggccgcggtactgtcggcggatatgcacaacaccgacaaggtggtg
atcctgatcgaagagattcgcagcatgaagctgcgtctcgatgcgccggatgtgaatgcc
tcggagttcaagttcacggtgaacgatgaaggccggatcatttatggcctgggagcgatc
aagggggtgggcgaggggcctgtcgaggccattaccgaggcgcgtcaggacggcccgttc
aaggatttgttcgatttctgcgcccgggttgacctcaaacgtatcaacaagcgtactctt
gatggcctgatccgcagcggtgcccttgaccgcctggggccgtttttccatgacgagccc
aaggcctggcaagccaacatcgaccagaaccgtgcggtgttgctgtcggcgctggaagaa
gcgatcaaggcagccgaacaaactgcgcgcacccatgacagcgggcacgccgacctgttt
ggcgggttgtttgtcgaggctgatgcggacgtctatgcccaccaccgcaaggccagggaa
ctgacgctcaaggagcgactcaaaggcgagaaggacactctgggcctgtacctgaccggc
catccgattgacgagtacgagggcgagatccgccgctttgcccgccagcgcattattgat
ctcaagccagcccgtgatacccagaccgttgccgggatgattatcgcgttgcgggtgatg
aagaacaaaaaaggcgacaagatgggctttatcactctcgatgaccgttcggcgcgcatt
gaagcgtcgttgtttgccgaggcgtttcattcggcgcagtcgctgttgcagactgatgcg
atggtggtggtcgaaggtgaagtcagcaatgacgacttctccggtggcctgcgcctgcgg
gtcaaacgggtgatgagcatggaagatgcacgcaccagtctggccgagagcttgcgcctg
aaagtgaaccgggacgcgctcaagggtgatcagttgcgtaatctgggcgagttgctgaaa
aaacatcgcggagcctgccctgtcaccatggagtacacgggcgaagaggccaaggccatg
ctgcagtttggcgagacctggcggatcgatccggcagacagcttgattcaagccctgcgt
gaccagttcgggcgagacaacgtcttcctccaataccgttga
DBGET
integrated database retrieval system
