Hoylesella buccalis: LK429_01805
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Entry
LK429_01805 CDS
T08692
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbuc
Hoylesella buccalis
Pathway
pbuc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LK429_01805 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbuc03400
]
LK429_01805 (mfd)
Enzymes [BR:
pbuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK429_01805 (mfd)
DNA repair and recombination proteins [BR:
pbuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LK429_01805 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UEA63340
LinkDB
All DBs
Position
complement(433820..437263)
Genome browser
AA seq
1147 aa
AA seq
DB search
MNIQDIQQLYGASPQAGALRKALEDKSVKTVFLQGLMASAAPMLFAGMAGQLSKTILFIL
QDADEAGYFYHDLTQALGNQQVLYFPSSYRRAVKYGQRDAANEILRTEVLAKLAAGKPLY
IVASPESLCELVVSKQKLDEGTIKLNVGQTVDLMQLKKNLLTFGFQEVDYVYEPGQFAVR
GSIVDVYSFSSEWPLRIDFFGDEIDTIRTFDVQDQLSKDKQTAIEIVPQLATADSEKVPF
LHFLPADALLVMKDFTYVHDIIDHVYNEGFASQVVQERMEGATEVEQQEIIRTLRREQQL
ITARQFAQDVAGFQCIQFGTQPSITPQATITFSITPQPLFHKNFDLLRQTFEDYALQGYD
LYIFAESKKQVERLREILGATPDAVLRDDNAAPRTSSRLHEPLSLKGTGDASLHEGFVDN
NLRICCFTDHQIFERFHKYNLKSDKARSGKMALTLKELQEMEPGDFIVHVDFGIGKFGGL
VRVPTGDTYQEMIRIIYQRGDIVDVSIHSLYKISKYRRSDTGEPPRLSTLGTGAWERLKE
KTKKRIKDIARDLIKLYAKRRHEKGFSFSADNYMQQELEASFLYEDTPDQVKATAEVKAD
MEKARPMDRLVCGDVGFGKTEVAIRAAFKAACDSKQVAVLVPTTVLAFQHYKTFQERLRG
MPVRVDYLSRARTAKQTRQVLDDLAAGRIDIIIGTHKLIGKSVKWHDLGLLIIDEEQKFG
VSTKEKLRKLKTNVDTLTMSATPIPRTLQFSLMGARDMSVMRTPPPNRYPIHTEIGVYGN
EIIADAINFEMSRNGQVYFVNDRISTLSEIEKMILKYVPDCRVAIGHGQMPPEQLENILI
GFMNHDYDVLLSTSIIENGIDISNANTIIINNAHRVGLSDLHQMRGRVGRSNRKAFCYLL
APPKSVLTPEARRRLEALETFSELGSGFNIAMQDLDIRGAGNLLGAEQSGFMEDLGYETY
QKILSQAVTELRNDEFSDLYEESIASGEVVSGADFVDDCAVESDLEMYFPDSYVPGSSER
MLLYRELDNIEDDNELAAYRQRLIDRFGPIPHEGEELMNVVALRRVGKRLGCEKLMLKQG
RMTMQFVSNPMSAYYKSKAFDSVLNYIGRHPRRCDLKEVKGRRMMHVSDVGSANEGLSIL
REIDGMA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgaatatacaagacattcaacaactatatggagcgtcgccacaggctggtgcgcttcga
aaagcactggaagacaagtcggtgaagaccgttttcctgcaaggactcatggcttctgct
gcccccatgctgttcgccggaatggccggacagctgtccaaaaccattcttttcattcta
caggatgccgatgaggcgggctatttctatcacgacctgacgcaggcgcttggcaatcag
caggtgctgtatttcccatcgtcataccgtagggccgtgaagtatggacaacgggatgcc
gccaacgagatattgcgcaccgaggtgttggccaagctggcggcgggcaagcctctttac
atcgtcgcctcgcccgaatcgctgtgcgaactggtggtgtcgaagcaaaaactggacgag
ggtaccatcaagttgaacgtgggacagacggtcgacctcatgcaactgaaaaaaaacttg
ttgacttttgggttccaagaggtggactatgtgtatgaacctggacagtttgccgtgcgc
gggagcattgtagacgtctattcgttcagcagtgaatggcctttgcgaatcgactttttt
ggagatgagatagatactattcgcacctttgacgtgcaagaccagctgtccaaggacaag
caaacggctatagaaatcgtacctcaattggccaccgcggacagtgaaaaagtgccgttc
ctgcacttcttacccgccgatgcgctgttggtgatgaaagatttcacctacgttcacgac
atcatcgaccacgtgtacaatgaaggttttgcatcgcaggtggtgcaagagcgcatggaa
ggagccacggaggtagagcaacaggagatcattcgcacgctgcgaagagagcaacaatta
atcacggcacggcaattcgcacaggatgtggctggttttcaatgcatccagtttggcacg
cagccatccatcacgccacaggccaccatcaccttcagcattacaccgcaacccttgttt
cataagaactttgacttgctgcgccaaacttttgaagactatgcactgcaagggtacgat
ttgtacatctttgccgagagtaaaaagcaggtagagcgtcttcgtgagatactgggagcc
acgcccgatgccgtcctgcgtgacgacaatgccgccccaagaacatcatctcggctccat
gaaccgctctccttgaagggcacgggcgatgcttcgttacacgaagggtttgtagacaac
aacctgaggatatgctgttttaccgatcatcagatattcgaacgctttcacaaatacaac
ctcaagtcggataaggcacgctcaggcaagatggctctcaccctgaaagaactgcaagag
atggagcctggcgattttatcgtgcacgttgactttggtattggtaagtttggaggtttg
gtgagagttcctacgggtgacacgtaccaagagatgattcgcatcatctatcagcgaggc
gacattgtcgacgtgtccattcactcgctgtacaaaatctctaagtaccgtcgcagtgat
acgggtgaaccgccacgactgtcgacattgggcacgggggcatgggaacggctcaaggag
aagaccaagaagcgcatcaaggacattgcgcgcgacctcatcaagttgtatgccaagcgt
cgccatgaaaagggattttctttcagtgccgataactatatgcagcaagagctggaggcc
agtttcctgtatgaggacacccccgaccaggtaaaggccacggctgaggtgaaagccgat
atggagaaagcgcgtcccatggatcgtttggtgtgcggcgatgtagggtttggcaagacc
gaggtggccattcgtgcagcgttcaaggccgcttgcgactcgaagcaggtggctgtgttg
gtgccaaccacggtgcttgccttccaacattacaagacttttcaagagcggttgcgtggt
atgccggtgcgagtggattatctttctcgcgccaggacggcgaaacagacccgtcaggtg
ttggatgatttggcggcagggcgtatcgacatcatcatcggaacgcacaagttgattggc
aagtcggtgaagtggcacgacttaggtttgctcatcatcgacgaagaacaaaagttcggc
gtgtccacaaaggagaaacttcgcaagctcaagactaacgtcgacacgcttaccatgtcg
gcaacgcccatcccgcgcaccctacaattttcgttgatgggtgcccgcgacatgagcgtg
atgcgcacgccgccacccaatcgctatcccattcacacagagattggtgtttatggaaac
gaaatcattgccgatgccatcaactttgagatgagtagaaacgggcaagtgtatttcgtg
aacgaccgtatctctacgctgtcagagattgagaagatgattttaaaatatgtacccgat
tgccgtgtagccattgggcatgggcaaatgccgcccgaacagttggagaacatcctcata
ggcttcatgaatcacgactatgacgtgctgctttcgacctctatcatcgagaatggaatc
gacatcagtaatgccaataccatcatcatcaacaatgcccatcgggtgggactgtcagac
cttcatcaaatgcggggacgcgtagggcgaagcaatcgcaaagccttttgctacctattg
gcacctcccaaatcggttcttacacccgaggcacgtcgacgtctcgaagctttggagacg
ttctctgaattgggtagtgggttcaacatcgccatgcaagacttggatattcgtggggca
ggaaacttgctaggtgcagaacagagcggttttatggaagacttggggtacgagacctat
caaaaaattctttcacaggctgtcaccgagctacgtaatgacgagttcagcgacctgtac
gaagaatctattgcaagtggagaagtggtatcaggagccgattttgtggatgattgtgcc
gtggagagcgatttggaaatgtatttccccgatagttatgtgccgggaagcagcgagcgc
atgttgctgtatagggaattggataatattgaagatgataatgaattggctgcatatcgg
cagcggttgatcgatcgtttcggtcccattccccacgaaggagaagaactcatgaatgtt
gttgcattgcgacgcgtgggtaaacgcttggggtgcgagaagctcatgctgaaacaaggt
agaatgaccatgcagtttgtgagcaatcccatgagtgcctattacaagagtaaggcattt
gatagcgtgctcaactatatcggcaggcatcctcgccgatgtgatttgaaagaagtaaaa
ggcaggcgcatgatgcacgtcagtgacgtgggaagtgccaatgaagggttgagcatactt
cgagaaatcgacggtatggcttaa
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