Hoylesella buccalis: LK429_03990
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Entry
LK429_03990 CDS
T08692
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbuc
Hoylesella buccalis
Pathway
pbuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK429_03990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbuc03019
]
LK429_03990
03009 Ribosome biogenesis [BR:
pbuc03009
]
LK429_03990
Enzymes [BR:
pbuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LK429_03990
Messenger RNA biogenesis [BR:
pbuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK429_03990
Ribosome biogenesis [BR:
pbuc03009
]
Prokaryotic type
rRNA helicases
LK429_03990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UEA63734
LinkDB
All DBs
Position
complement(978930..980813)
Genome browser
AA seq
627 aa
AA seq
DB search
MKTFEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLP
LLQKIDVDSKHTQAIILSPTRELCLQIADDLKDFAKYIKNLHVEPVYGGASIVTQIHALK
HGAQIIVATPGRLIDLMNRGVAKLDQVNNVVLDEADEMLNMGFSESINTILAGVPDDRNT
LLFSATMSNEIEKIAKTYLRDYKEIVVGSRNEGAENVNHVYYMVNARDKYLALKRIVDYY
PRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHVTQLLVATD
VAARGLDVDDLTHVINYGMPDDTENYTHRSGRTGRAGKKGTSICIIHTRERSKVRAVEKI
IGKEFVDGTLPTAQEICAKQLYKAMHDIEKIDVDEEQIAPFMVEINRHFEYVDKDDIIKK
IVSLTFGRFLDYYANAPEIEKPSLKRGDRGEEKGMRGGRKARSERGGGRSRTPERGYRRL
FINLGKDDGFYPGEVMQFINQHVKGRQQVGHIDLLGKISYIEVPEKDANKVMRSLSGATY
KGREVRCNDANEEGHGRKAQATRGGGRAAGRRAESGRKNGKSVKRPSYQQQDTGDWRQFF
QQPEVKFKGETPDFSEEGWARRKPRKG
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
ttgaagacatttgaagaattaggcgttagcgaagagattcgccgcgccattgaggagctg
gggtttgtacaccccatgccagtacaagaagaggtcatcccttatttgttgggaaacaag
aacgatgtaattgcattagcacagacaggaacaggtaaaacggcagcatacggcttgccc
cttttgcagaaaatagatgttgacagcaagcatacacaagccattattttaagtcctaca
cgcgaactgtgtttgcaaatcgctgatgacttgaaggatttcgctaaatatatcaagaat
ctacacgtagaacccgtgtacggaggtgccagtatcgtcacccaaattcatgcactcaaa
catggcgcacaaatcattgtggcgactccgggacgacttatcgacctgatgaaccgtggg
gtagcaaagctggaccaagtgaacaatgtggtgttggatgaggctgatgagatgttgaac
atgggtttctcggagagcatcaataccattttggcaggcgttcccgacgaccgcaacacc
ttgttgttctcggcaaccatgagcaacgagatagaaaagattgccaagacttacttgcgt
gactacaaggagattgtagtgggaagccgaaacgagggtgccgaaaacgtgaaccacgtt
tattatatggtgaatgcgcgtgacaaatacttggctctgaagcgcatcgtggattactat
ccacgcatttttgccattatcttctgccgaacgaagattgaaacgcaagaaattgccgac
aaacttatcaaggatgggtacaacgcagaggcgctgcatggcgacctgagtcagcaacag
cgcgacctcaccatgcagaagttccgccaacatgtcacccagctgttggtggcaaccgat
gtggctgcacgtggattggatgtggacgacctgacgcatgtcatcaattatggcatgccc
gatgataccgagaattacacgcatcgtagcggacgaacgggacgtgcagggaagaaaggt
acttctatttgcatcattcacacccgtgagcgttccaaagtgcgtgccgtggagaaaata
attggcaaggaatttgttgatggaacattgcctaccgcacaggaaatttgcgccaagcag
ttgtataaagccatgcacgacatcgagaagattgatgttgacgaagagcagattgcgccc
tttatggttgaaattaaccgacactttgaatatgtcgacaaggatgatatcatcaagaag
attgtcagtttgacgtttggacgcttcttggattactacgcgaatgcgccagagatagag
aaaccctcgctcaaacgtggcgacagaggtgaggaaaaaggtatgcgtggtggcaggaaa
gctcgttcggagcgaggcggaggccgttctcgtacacccgagagaggttatcgcaggctg
ttcatcaacttgggtaaggacgatggattctatcccggagaggtgatgcagtttattaac
cagcatgtaaaaggtaggcagcaggtggggcatattgacctgttgggaaaaatatcctat
atcgaagtgcccgaaaaagacgccaacaaggtgatgcgttctttgtcgggagcgacctac
aagggtagagaggtgcgctgcaatgatgccaacgaagaaggtcatggacgcaaagcgcaa
gccacaagaggtggcggaagagctgcaggtagacgtgcggagagcggacgaaagaatgga
aaaagcgtgaaacgcccctcttatcagcagcaagataccggcgactggcgacagttcttc
cagcaacccgaggtgaaattcaagggtgagacccccgatttctccgaagaaggatgggca
cgccgcaagcctcgtaaggggtaa
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