Hoylesella buccalis: LK429_06070
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Entry
LK429_06070 CDS
T08692
Name
(GenBank) type IV secretion protein Rhs
Organism
pbuc
Hoylesella buccalis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpvB
TcdB_toxin_midN
RHS_repeat
FG-GAP_3
FG-GAP
DUF6443
Motif
Other DBs
NCBI-ProteinID:
UEA64100
LinkDB
All DBs
Position
1493609..1503559
Genome browser
AA seq
3316 aa
AA seq
DB search
MKTKHYLISAALLTAITAAIAATHIYKGQDSARENNGTSISQSMAAQTETFTKNVHNAEK
ATQGISRTARKEDKSKTTAAATSSVMATAYTADHASGIIGQPDGRVSDNPEDNIFEITVE
KVSPNMRAWLVYDLKGVSSGQGISRSINDRTAVGGYLTVLSKDWKTVREEISPEWLKDGR
NTVLFTIPTDASYAYSVRNVHIETVADAKTKTNTNKQEEIILSSAPIAYDGQTYLYGFVR
GKASRISVNGTTITVHDGEFEGIVPSTGRQLKLTAVIDGRNISRKITPIQGGRADYARAL
VSVGGKAEKQFLAHRADSIAIGGNVLSVKAADIARNGRYSVTTLRETDIPALDYGMTNVT
AKGDGYRFLPHGNHFEGKGATVKIKYDRTRIPSGFTEDDINTYYFDKNTKHWVALERVRV
DKKETCVVSRTTHFTDMINGVIKAPESPQTDGFTPTMMNDIKAADPTSKINLITPPTANN
RGSANLQYGFEMPPARNGMAPSLGIQYSSEGGSGWLGEGWNLSVPSITLDTRWGVPRYDT
SKETETYLMSGSMLSTMGDDGKMGVAHRGEKMNRKADRQFYTRQGGDFSRIIRKGNSPTD
YTWEVTDKQGIKYIYGGEGAVLKGTITDASGQSREVITEWKLKRVEETHGDYIEYVYETA
DEPVRGGLVAKAIYLKEVRAGNSGQAPHTVVVLEGSKQKRLKNNNARYGFLTSSNRLLEK
LTVNFQGSTLRSYAFTYGEGAFNKDVLTGVKQLDDKGAEVSYQNFDYYDDVQAAKGYVPF
KEKQETWNTHNDHLGAGFLNPLQFVSKAFSDKPSALGGTTSFSLSGSFYAGIGPMDGDKW
KGNTIGASYGYSLDKSNGVSTLVDINGDGLPDKVFRKGGALYYRPQIPTSQNSEVLYGED
VRIVGVSGFSKITSSTHNGGAKATVGYQLFTAEVGVDFSSTKTKTTEYLSDINGDGLVDL
VFNKKVYFNHIEFDKQGKAIPVFTLSSADTPSPIIYSGKIDASVIKIDPAEQEELIKSSP
MEDMVRVWQAPKDGIISISGTVSLITPTGEYDTDEYAHADGVRVAIQKGSTELWNKKITK
GDGTAYNATTQNITVKKGDRIYFRVQSGTEETSNGAFDNVKWAPVITYTGAAETLPGGLS
TTVYQPQEGAIYDANTLTNVAESTSLNLSGKFTKPVTTDDVTLKIIASNSETDSIGNKNP
TYQRKVIYTRTFAWKEAFNGEIQQTIPNPDGLTNLNFEISSSSNVDWSKIKWTPQIETIG
KDGSRQRTAGAAHYVLFADMVSEGKPVVLASNVSTLTVTPSITMLPPTANGMVTMTVKTV
DKLLGKKTYTFSGGNLLGDPLTVPGVSAGKIWIDYSYSGNISGQIVTSAATVSGIGTVLA
GFYAQTENKGFGTMYRGWGGFVYNASEGRYGKPIDESLLKLPDSKDAKINPLTMPFTPIG
TDQMTFARWIGQNEFIYLTADAMGTARLGEQQVILTNPLEGSTETAALTGDCLQGTGATA
VTLVSTSKSTVKQGGSMGITYNEAGGTSTTDVTMTDMNGDGYPDIIAGGTIQYTNTQGGL
SGEKYGGMGKTTGTHSSKAWGAGGKPVASGVALLDMMTPYKGGSTGTQMNTGLKKALNNL
RTSFLAKISISGNIPENTEDAVETFMDINGDGLPDKILTDRRVRLNLGYSFADPIAWDID
RIQGGKTNSYNMSIGAGDTIFTKKHITEDKKSIVKASGSVSGGVGLVTSRGVEEYDLIDI
NSDGLPDKVWMTDDKVFVALNKGDGFTDGILWKGTSLLSENISTAESVNGAFTYTIFTPM
PTPVVKICLNPGTSTGHSINRTTYSLQDVDGDGYLDIVESDKESELKVTRSAIGRTNMLR
SVTNSLGGTFTLDYEHTTPTYGLPGGKWVMSSVTVDDGIHDDGPLMKTVFAYSDGQKDRH
EREFLGFGKVVTKNIDTEQGETAVYRQAVQLYDVSTYYAQGNELGASVEDAKGNKYTETR
NEYDGYYITASGDRYTFNKQKKLCSDRASAFVPLRYTANKQYEGQATGITTSEAWNEYYL
TSYHGELKSYKFSDKGKLGADGSGKFDYQTAIQYAHNDNKHIFGLPTNVTVTGGDGKIYH
QVSATYDLNYADHITQIKQQLGSGEAVSDYTYDTYGNIIKTTLPANSKGQRMWYTYRYEP
VMNMYVERIDDAFGYRSEAANFDYRYGMALRRMDLNHFYYETDIDNLGRVKAVRGPNELA
TGVPYIIAFDYQPKATFGTNGITAPAYAVTKHYDIQHPSNDLETVTFVDGFGRPVQVKKD
GVVTTAAKGSAPKDEIVMIVSGRNVYDAFGRVAKAYYPVTEAVGNKTTFNKAFDNVSPTV
TVYDVLDRAMKVTLPDNAETKTEYSTDAGSNALVTTVTDALGNRQATYTDGSGKTVKTEQ
LSGPDGIITTSFEYDGIDRLVKVTDTEGNVTTSVYDMGDRRTEVNHPASGITTFTYDALG
NVLTKQTANLKKEGKTINYEYDYGRLTAINYPDHPENNVKYHYGGINSSHNRIGRLMLRE
DGSGAIEYYYGKMGEVTKTVRTLIVPNQAVATYVTQWKYDSHNRLLEMIYPDEEKVTYGY
NLGGQVDHVRGYKSYGYDYVNKIGYDKFEQRTYLKYCNGAETFYSYDPQRRRLQNLVVNA
KVGTIMDNAYSYDAVSNVLGIKNNAPLPQSGKAGGQMSHSYTYDPLYRLASAAGTYKGTD
NKSASYTLSMGYDNMHRITSKKQHLSQTGVQFDGTLNTGYDLTYTYQKAEGKKFQLDNVR
DINYRTEETPTDSTNINNGHKYTYDLNGNLVYINTSRVKKDGKEDEKASEQKYRWDEENR
LLAADENGFVSNYWYDADGERTVKSSGENEAIYVNSEFSGGNTGTARFSLYVSPYLVAGQ
GGKYTKHIYVGSQRIVSKLGDLASYGADPRRIPYAGNEADGLTINYKDKYAKQLQSIKDN
YKTFDLPYNGEDNDDYVNGQGFCCNDGTPEAAQARAMARTRAVNDNFHDKDNYEKMQFYY
HPDHLGSSSYITNLDGEVSQHIEYVPFGEVFIEERNNTWNTPYLFNAKEFDEETGMYYYG
ARYMNPQNSMWLGVDPLTEKYPNLTGYCYTNNNPVKYIDPTGTDWYRNDETAAIFWQEGN
ANSITYDGQEYRNIGETYSIYQSGMRYDYQQDKIIKVSDASGRFNVEGGQYIPKSFITDD
GTKVSVTFKYKSPTGGYGDYALSKDAVSLLIKGINDANISGAGITSIDVSTTTTGKHSPT
SNHYASNGGRAIDIDMVNGISVKNPKSHEKVDAFQRAIRENPILRENFGPNIQEKEGKTK
RISGHNNHIHIATQKR
NT seq
9951 nt
NT seq
+upstream
nt +downstream
nt
atgaagacaaagcattacctcatatcggcggcattactgacagccatcaccgcagccatc
gctgcgacgcatatatacaagggacaggacagtgcacgtgaaaacaacggcacgagtata
tcacaatccatggcagcacagaccgagacattcacgaagaacgtccataacgcagaaaaa
gctacgcagggaatatcacggacggcaaggaaggaggataagtcaaagacgacagcagca
gcaacttcttccgttatggcgaccgcctacacggcagaccatgcctcgggcatcatagga
cagcccgacggacgggtttcggacaaccccgaggacaacatcttcgagataacagtcgag
aaagtctctccaaatatgcgcgcatggctggtctatgacctcaagggcgtaagttctggt
cagggcatcagcaggagcatcaacgatcgcacggctgtcggcggctaccttacggttctt
tccaaggactggaagaccgtcagggaggaaataagccccgagtggctgaaggacggcagg
aacaccgtcctcttcaccattccgacggatgcttcctacgcctattcggtcaggaacgta
catatcgaaaccgtagcggatgctaagacaaagactaataccaataagcaggaagaaata
atcctttcctccgcccccatagcctatgacggtcagacctacctctacggcttcgtacga
gggaaggcaagccgtatctcagtgaacggcacaaccatcaccgtccatgacggagaattc
gagggcatcgtgccatcgacgggcagacagctcaagctcacggcagtcattgatggcagg
aacatcagtaggaaaataacacccatacaaggaggcagggcggactatgcccgtgccctc
gtgtccgtcggtggaaaggcggagaagcagttcctcgcacacagggcggacagcatcgcc
atcggcggcaacgtcctttccgtgaaggctgcggacatcgcaaggaacggcagatactcc
gtcacgacactccgcgagacggacattcctgcccttgactacggcatgaccaacgtcacc
gccaagggagacggttaccgctttctgccccacggcaaccacttcgagggcaagggtgcg
acggtgaagataaaatacgaccgcacgcgaatcccgagcggttttacagaagacgacatc
aatacctattacttcgacaagaataccaagcactgggtggcactggaaagagtcagggtg
gataagaaggagacctgcgtcgtgtcacgcaccacgcactttacagatatgattaacggt
gtcatcaaagcacccgaatcaccacagaccgatggatttaccccgacgatgatgaatgac
atcaaggcagcggatccgacatcaaaaatcaatcttattactcctcctacggctaacaac
cgcggctcagctaatctacagtatggcttcgagatgccacctgcccgcaatggtatggct
ccttctttgggcatacagtacagtagtgaaggcggtagtggatggcttggagagggttgg
aatctctctgttccttctattacgttggatactcgctggggtgttccaagatacgataca
agtaaagaaaccgagacttatttgatgtcgggttctatgctttccacgatgggtgacgac
ggcaagatgggtgtggctcaccgtggtgagaagatgaaccgaaaagcggacagacagttc
tacactcggcagggaggagacttcagccgtattatccgaaagggtaattctcctaccgac
tatacttgggaagtaaccgacaaacaaggaatcaaatatatttatggtggagaaggtgcc
gttctcaaaggtaccatcaccgatgcaagcggtcaaagccgtgaggtgattaccgaatgg
aagctcaaacgtgtggaagaaacacacggtgattatatcgaatacgtctatgagacagcc
gacgaacctgttcgtggtggacttgtggcaaaagccatttatcttaaggaagtacgtgct
ggtaatagcggacaagcaccccacacagtggttgtcttagaaggcagtaaacagaaacga
ctcaaaaacaacaatgcaagatatggcttcctaacctcatcgaatcgtttgttagagaag
ctaacggtgaacttccaaggaagtacgctccgcagttatgcctttacctatggcgagggt
gcgttcaacaaagatgtgcttacgggtgtgaagcagctcgacgacaaaggtgcagaagtg
tcttatcagaattttgactattatgatgatgtacaggctgccaaggggtatgtgcctttt
aaggaaaaacaggaaacatggaatacgcacaacgaccatttaggtgcaggcttcttgaat
ccattacaatttgtcagcaaagctttttctgacaaacccagtgcccttggtggaacaacg
agtttctcccttagtggatcattttatgccggtatcggtccgatggatggagataaatgg
aaaggaaataccataggcgcatcttatgggtattctttggataagagcaatggagtctct
acattggtggatattaatggtgatgggcttcctgataaggtctttagaaaaggtggcgca
ctttattatcgtccccaaataccgacttcgcaaaatagtgaagtactatatggagaagat
gtgcgtattgtaggagtctctggtttctccaagataacaagttcaacccataatggaggg
gcaaaagccactgttggttatcagttattcacggcagaagtaggtgttgatttctcttcg
accaaaaccaagacaacggaatacctttcagacatcaatggcgatggcctcgtagacttg
gttttcaacaaaaaagtgtatttcaaccatattgagttcgacaagcaaggtaaagccatt
cctgttttcaccctcagcagtgctgatacgccgagtccgattatctacagtggtaagata
gatgcctctgtcatcaagatagaccctgcagagcaggaagaactgattaaatcctctcct
atggaagatatggtacgtgtatggcaggcacctaaagatggaatcatcagcatctcgggt
acagttagtttgattactccaacaggcgaatacgataccgatgagtatgctcatgctgat
ggtgtgcgcgtagccattcagaaaggtagtacggaactctggaacaagaaaattaccaaa
ggagatggaacggcttataatgctacgacacagaatatcactgtcaagaaaggcgaccgc
atttacttccgtgttcagtctggtacagaggaaacaagcaacggtgcttttgataacgtg
aaatgggcgcctgtcattacctatacaggtgcggcagaaacactccctggcggattatct
accactgtttatcaacctcaggagggtgccatttatgatgccaatacactgaccaatgtg
gcggagagcacttctttgaacctgtcaggcaagttcaccaaacccgtcaccacggatgac
gttacgcttaaaatcattgcttcaaacagtgaaacagatagtataggaaacaagaatccg
acatatcagcgtaaggtaatctatacccgtacctttgcatggaaagaagcatttaacgga
gaaatccaacaaacaatccctaaccctgatggcttgacaaatctgaactttgaaatcagt
tcttcttctaatgtggactggtcgaaaataaagtggacaccacaaatagagaccataggc
aaggatggaagcaggcagcgcacggcaggggcagcccattatgttctctttgctgacatg
gtcagtgaaggtaagcctgtagtacttgcttccaatgtttcaaccctgacagttactccg
agtatcacgatgctaccaccaacggcaaacggaatggtgacgatgacagtcaagactgta
gacaaactgctgggtaaaaagacttacactttcagtggtggtaatcttttaggagacccg
ctgacagtccctggtgtcagtgcaggcaagatatggatagattactcttattcaggtaac
atctcaggtcagatagtaacttctgcagctactgtcagtggcataggaacggtactggca
ggcttctatgctcagacagagaacaaaggcttcggcacaatgtatcgtggttggggtggc
tttgtttataatgcttccgaaggtaggtatggcaaacctattgatgaatcactgttgaag
ctccccgatagcaaggatgccaagataaatccattaaccatgccatttacccccattgga
acagatcaaatgacctttgcacgctggattggtcaaaatgaattcatttatctgacggca
gatgcgatgggaactgctcggttgggtgaacagcaagtcatattgacaaatcctttagaa
ggtagtacagaaacagcagcacttacaggagattgtttgcaaggaacaggagctactgca
gtgacactggtatcaaccagcaaaagtacagtcaaacaaggaggtagtatgggaattacc
tacaatgaagcaggaggaacatcaacaacagatgttaccatgacggatatgaatggcgac
ggttatccagacattatcgcaggcggtactattcaatataccaacactcaaggcggtctc
agtggagagaaatatggtggtatgggtaaaaccactggaacgcatagttccaaagcatgg
ggagcaggcggaaaacctgtcgcttccggtgtagcactcttggatatgatgacaccctac
aaaggcggttctactggtacgcaaatgaatactgggctcaaaaaagctctcaataacctg
cgtacatctttccttgccaaaatatccatatctggtaacattcctgagaatacagaagac
gctgtagaaacattcatggatatcaatggagatggactccccgataaaattctgacagat
aggagagttcgattaaaccttggttattcgtttgctgatcctatagcatgggacatagat
cgcatacagggcggaaagacaaactcttacaacatgagtataggcgccggtgatacgatt
tttacaaaaaaacatattacagaagataagaaaagtatagtaaaagcttcggggagcgtt
agtggaggagtcggtttggtaacctctcgaggtgtagaagaatatgatttgattgatatc
aactccgatggcttgcccgacaaggtctggatgacagacgacaaggtctttgtcgccttg
aacaaaggagacggatttactgatggcattctttggaaaggaacctcgttgttgagtgaa
aacatatctacagcagaatcggttaatggtgcatttacctatacaattttcacccccatg
cctacgccggttgtcaagatttgtctgaatcccggcacaagcacgggacactccatcaac
cgcacgacctactccctgcaggacgttgacggcgacgggtatttggacatcgttgagtcc
gataaagaaagcgaactaaaggttactcgctccgccatcggcaggacgaacatgcttagg
agcgtgaccaactcgctcggcggcacctttacgctcgactacgaacataccacgccaact
tacggacttcccggcggtaagtgggtgatgtcttcggtcacagtcgatgacggtatccat
gatgacggtccgctgatgaagaccgtcttcgcctactccgatggacagaaggatcgccac
gaacgtgagttcctcggttttggaaaggtcgtaaccaagaatatcgacaccgaacaggga
gaaaccgcagtctatcgtcaggctgtgcagctctacgatgtgtccacctactatgcacag
ggcaatgagcttggagcgtctgtagaggatgccaaaggcaacaagtacaccgagacacgc
aatgaatatgacggctattatatcactgccagcggtgacagatatactttcaacaaacag
aagaaactctgtagcgaccgtgcttccgctttcgtgccgctacgctataccgccaataag
cagtatgagggacaggcaaccggcatcaccacctctgaggcttggaatgagtattacctc
actagctatcacggagaactgaagtcctacaagttcagtgataagggtaagttgggtgct
gacggttcgggtaagttcgactaccaaaccgcaatacaatatgctcacaatgataacaaa
catatcttcgggctacctaccaacgtaaccgtaacgggcggtgatggtaagatttatcat
caagtttctgcgacttacgatttgaactatgccgaccatattacgcagattaaacaacaa
ctcggaagcggtgaagctgtctctgactatacttatgatacttacggcaacatcatcaag
accacgcttcctgctaacagcaagggacagcgcatgtggtacacctaccgctatgagccg
gtgatgaatatgtatgtggagcgcatagacgatgcctttggctaccgtagcgaggcagcc
aacttcgactaccgctatggtatggcactccgccgtatggatctcaaccacttctattat
gaaacggatatagataacctcggacgtgtgaaagctgtgcgtggtcctaatgagttggca
acaggtgtgccttacatcattgcctttgactatcagcctaaggctactttcggcaccaat
ggcatcactgcacctgcgtacgcagtgaccaagcattacgacatacagcacccaagtaac
gatttggagaccgtcaccttcgtggacggcttcgggcgtcccgttcaggtgaagaaagac
ggtgtggtaacgacagctgccaagggtagtgctccgaaagacgagatcgtgatgattgtc
agcggacgcaacgtctatgacgctttcggtcgtgtggctaaggcttactaccctgtaacc
gaagctgtgggaaacaagacaactttcaacaaggcttttgacaacgtgtcgccaaccgta
acggtttatgacgtgcttgaccgtgccatgaaagtaacacttccggacaatgctgagacc
aagacggaatactctacggacgcaggtagcaatgcactcgtaacgactgtaactgatgcg
ttgggtaatcgtcaggcaacctataccgatggtagtggcaagaccgtgaagaccgagcaa
ctcagcggacccgatggtatcattaccacctccttcgaatatgatggcattgaccgattg
gtcaaggtaacagacaccgagggcaacgtaacgacatccgtctatgatatgggcgaccgt
cgcactgaggtaaaccaccctgcaagcggtatcaccacctttacctacgatgctttgggc
aatgtgctcaccaagcagacagccaatctcaaaaaggagggcaagaccatcaattacgag
tacgactacggtcgtctgacggctatcaactatcccgaccatccggaaaataacgtgaag
taccattacggtggtatcaactcttctcacaaccgtatcggcagactgatgctccgtgag
gacggcagtggcgctatcgagtattactatggtaaaatgggtgaggttaccaagaccgtg
cgcacgctgattgtgcctaatcaggcagtggcaacctacgtaacacagtggaagtatgac
agccataatcgcctattggaaatgatttaccccgatgaggagaaagtaacctacggttac
aacctcggtgggcaggtagaccatgtgcgtggctacaagtcctatggctacgattatgtg
aacaagattggttatgacaagttcgagcagcgcacctacctgaagtattgcaatggagcg
gaaaccttctacagctatgacccgcaacgacgcaggttgcagaacctcgtagtgaatgct
aaggtaggtactatcatggacaatgcctacagctacgacgcagtgagcaacgtgctcggt
attaagaacaatgctccactcccacagagtggtaaggcaggcggacagatgagccatagt
tatacttatgacccactgtatcgtttggcaagcgcagcgggaacttataagggaacagac
aataaatccgcttcttataccttatctatgggctacgacaatatgcatcgtatcacgagt
aagaagcaacacctctcacagacaggtgtgcagttcgacggcacgctcaacacaggctat
gacctcacctatacttatcaaaaggcagagggtaagaagttccagcttgacaatgttcgt
gatatcaactaccgaacggaggagactccgacggacagcaccaatatcaacaacggacac
aaatacacttacgacctcaacggaaacctcgtctatatcaacacctctcgtgtgaagaaa
gacggcaaggaggatgaaaaggcaagtgagcagaagtaccgttgggacgaggagaacaga
ctcttggcagctgatgaaaacggctttgtgagcaactattggtatgatgccgatggtgag
cgcacggtgaagagcagtggcgagaatgaagccatctatgtgaactccgagttctcgggt
ggcaacaccggtacggcacgcttctcgctctatgtcagcccatacctcgtggcagggcaa
ggtggcaaatatacgaagcacatttatgtaggtagccagagaattgtcagcaagcttggc
gacctcgcttcttatggcgcagacccaaggcgaataccgtatgcaggcaatgaagccgat
ggcttgaccattaactacaaggacaagtatgcaaagcaactgcaatccattaaggataac
tacaagacgtttgacttgccatacaatggtgaggacaatgacgactacgtgaacggtcag
ggtttctgttgcaacgatggtacgccggaggcggcacaagcccgtgcgatggcacgcaca
agagctgtaaacgataatttccacgataaggataattatgagaagatgcagttctactac
catcccgaccatttgggtagcagtagttacatcaccaacttggacggcgaagtatcacag
catatcgagtatgtaccgttcggcgaagtgttcatcgaagagcgcaacaatacgtggaac
acgccgtacctcttcaacgctaaagagtttgacgaggaaacaggtatgtactactatggt
gcaagatatatgaatccccaaaattctatgtggctgggggttgatccgctaacggagaaa
tatccgaatttaacaggatattgctacacaaataataatcctgtcaagtatattgatcca
actggtacagattggtatagaaatgatgaaactgctgctattttctggcaggaagggaat
gctaactctataacatacgatggtcaggagtatagaaatataggtgaaacatatagtata
tatcaatctggaatgagatacgattatcagcaggataagattataaaagtatccgatgca
agtggtaggtttaatgtagaaggtgggcaatatatacctaagagttttataacagatgat
ggaactaaagttagtgtaacttttaagtataagagtccaactgggggttatggtgattat
gcattgtcaaaagatgctgttagtttattaattaaagggataaacgatgctaatatttct
ggcgcaggaattacttctattgatgtttctacaactacaactgggaaacattcccctaca
agcaatcattatgcatcaaatggaggaagagctatagacattgacatggtaaatggaatc
tcagttaaaaatcctaaatcacatgaaaaagttgatgcttttcaacgtgcaattagagag
aatcctatcttaagagagaattttggacctaatatacaagaaaaagaggggaaaactaag
aggatctctgggcataataatcatattcatattgcaactcaaaagcgatga
DBGET
integrated database retrieval system
