Peribacillus butanolivorans: DTO10_12050
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Entry
DTO10_12050 CDS
T06699
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbut
Peribacillus butanolivorans
Pathway
pbut03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DTO10_12050 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbut03400
]
DTO10_12050 (mfd)
Enzymes [BR:
pbut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DTO10_12050 (mfd)
DNA repair and recombination proteins [BR:
pbut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DTO10_12050 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
Hormone_1
Motif
Other DBs
NCBI-ProteinID:
AXN39069
UniProt:
A0AAX0RZP9
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All DBs
Position
2505732..2509268
Genome browser
AA seq
1178 aa
AA seq
DB search
MNGLQNLFSKQDDVHSLIAGIDEGLKEQIVSGLTGSSRSLLLAAVYEKTNRPILLVTHNL
LQAQKFHEDLSSFIPEDELYIYPANELIAADLSVASPELRAQRVEALNFWTEGKKGIVIA
PIPGVRRVLPPKDIWKRHQLTFKLGEEIELDPTLNKFIAMGYNRAEMVASPGEFSIRGGI
IDIYPITEPNPMRIELFDTEIDSIRTFSTEDQRSIEKLQKVTIGPVSEALLEERHIERII
SKLESGLSKSLKKLKDEKTKEQLVQTISSELEQLKMGNKPDQIFKYLSLAYEKPASLIDY
LPVNGLVFLDEISRIQEINDSLEKEEAGWYTDLLSQGQIIHDIKLAHPMHELIMKSNRPF
VYLSLFLRHVPHTNPQNILNFASKQMQNFHGQMNVFKTELERWKKGKYTVVILGQDDERV
KKLHSILADYDIEAAELFDANSILPGKVQILRGSLNSGFELPMQKFSIITETELFNKKSK
KSIRRQKLSNAERIKSYSELKIGDHVVHVNHGIGKYLGIETLTINGVHKDYLHIRYQADD
KLYVPVDQIDLVQKYVGSEGKEPKLYKLGGTEWKRVKSKVQSSVENIADDLIKLYAEREA
AKGYAFSPDGDMQREFETSFAYNETEDQLRSIVEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIMDGKQVAFLVPTTILAQQHFETLRERFQDYPISIGLMSRFRTKKQQTETIK
GLKAGTVDIVVGTHRILSKDIVYRDLGLLIIDEEQRFGVTHKEKIKRLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNGSLVTEAIERELARDGQVYFLYN
RVEDIARKAEEISMLVPDARVTYAHGQMSEQELEAVMFGFLEGEYDVLVSTTIIETGVDI
PNVNTLIVNEADRMGLSQLYQLRGRVGRSNRVAYAFFTYRKDKVLTEVAEKRLQSIKEFT
ELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAVEAKRNDQPVEEKAS
LEIDVEVDAYIPDAYIADGHQKIEMYKRFRGITSLEEVEELQDEMLDRFGEYPDEVAYLF
LIAEMKVYAEKAGIESIKQLKQEISILLREKVSSGVDGQKVFELGSKYGRMVGFGMDGNR
MKLVLHIKGVEQSKWLDILFEMAKGLQHVKKEIQATKN
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
gtgaatggattgcaaaacttattctccaaacaagatgatgttcattcgttaatagccggc
attgatgagggacttaaggaacaaatagtatctggtctaacaggttcttcgagatcactt
ctgctggcggccgtatatgaaaagacgaacaggccgattttattagtaacccataattta
ttgcaagcacaaaaattccatgaggatttatccagttttatcccagaggatgaactatat
atttatcccgccaatgagttaattgctgctgatttgagtgtagctagtccagaattaaga
gcccaacgtgtagaggcattgaatttttggacggagggaaagaaagggattgtcattgcg
cctattcctggggttcgccgtgtgcttcctccaaaggatatttggaagaggcatcagctt
acttttaaactaggggaagaaattgaacttgacccaacgcttaataaatttattgcaatg
ggctataaccgagcggaaatggttgcctctccaggagaattcagcattcggggcggtatc
atcgatatatatccgattacggaacctaatccaatgcgaattgagttatttgatactgaa
atagattccattagaaccttttctacggaagatcagcgatcaattgagaagctccaaaaa
gtgacaatcggtccggttagtgaggccttgctagaagaaaggcacattgaaagaattata
tcgaaactcgaaagcggattaagtaaaagtttgaaaaagcttaaagatgaaaaaacaaag
gaacaattggttcaaacaatcagctctgaacttgaacagctgaaaatggggaataagccc
gaccaaatctttaaatacttaagtttagcttatgagaaacccgctagtttaatagactat
ttacctgtaaatggcttagttttcttagatgaaatcagcagaatccaggaaatcaatgat
tctttggaaaaggaagaggcaggatggtataccgaccttttaagtcaggggcagattatc
catgatattaaattggctcatcccatgcatgaattaattatgaaatcaaacaggccgttt
gtgtatctttcattatttttacggcatgtaccgcatacaaatcctcagaatatcctgaat
tttgccagtaaacagatgcaaaatttccacggacagatgaacgtgtttaaaactgaactg
gaacgttggaaaaaaggaaagtatacagtcgttatactaggccaggatgatgaacgggtg
aaaaagctgcattcgattttagcggattatgatattgaagcggcagagctttttgatgcg
aacagtattcttccggggaaagtacagattttacgcggcagccttaacagtggctttgaa
ttacctatgcaaaaatttagtattattacggaaacggaattatttaataagaaatctaaa
aaatcaattcgcaggcagaaactatcgaatgcggaacgaataaagagttattccgaactg
aaaatcggtgaccatgtcgttcatgttaaccatggtatcgggaaatatttggggattgaa
acgctaaccatcaatggagttcataaggattatctacatatccggtatcaggcggatgac
aagctgtatgtaccagttgaccaaattgatcttgtccaaaaatatgtcggttccgaaggc
aaggagccgaagctttacaaattaggcggaacggaatggaaacgtgttaaaagcaaggtt
caatcatctgttgagaatattgcggatgatttaatcaagctgtatgcagaaagggaagcg
gcaaagggttatgccttttcacctgatggggatatgcagagggaatttgaaacatcattc
gcttataacgaaacagaagatcaactgcgttctattgtagagattaaaaaagatatggaa
cgtgaaaggccaatggatcgtttattatgtggtgatgtcggttatgggaagacagaggta
gctattcgcgctgcttttaaagctattatggatggcaagcaggttgcttttctcgttcca
accactatccttgcccaacagcattttgaaacattgagagagcgttttcaggactatccc
atttcgattgggcttatgagtcgttttcggacgaaaaagcagcaaacggaaacgataaag
ggattaaaagctggaacggtggatatcgttgtgggtacgcacaggattttatccaaagat
attgtgtatcgagacttaggtttgcttattattgatgaagaacagcggtttggcgtaaca
cataaggaaaaaatcaaacgcttaaaaaccaatgtcgatgtattgactttgacagcgacg
ccaattccaagaactctccatatgtctatgcttggcgtgcgggatttgtctgtcatcgaa
acacctccagagaaccgtttcccaatccaaacgtatgtaatggagtataatggctcgctg
gtaacagaagcgattgagcgagaattggcaagggatggtcaggtttattttctttataat
cgggtagaagatatagcaagaaaagcagaagaaatttccatgttggtgccagatgcccgc
gtcacatatgcacatgggcaaatgtctgagcaggaactagaagctgttatgtttggattt
ttagaaggcgaatacgatgttttagtaagtacaaccattatagagaccggtgtggatatc
ccaaatgtcaatacgcttattgtgaatgaagcagatagaatgggactttcccagctttat
caactgcgtggtcgtgttgggcgatccaatcgggttgcatatgcattctttacttacaga
aaagataaagttttgacggaagtagcagaaaaacgtcttcaatccattaaggaatttaca
gaattgggatcagggttcaaaattgcgatgcgtgatttatccatcaggggagctgggaat
atactaggagctcaacaacatggcttcatcgattcagtcggttttgatttgtattctcaa
atgctgaaagaagctgtagaggcgaaacgtaatgatcaaccagttgaagaaaaggcctca
cttgaaattgacgttgaggtagatgcgtatatccctgatgcctacatagcggatggacat
cagaaaatcgaaatgtataaaagattcagaggcattacttctctagaagaagtggaagaa
ttacaagatgaaatgctcgatcggttcggtgaatatcctgatgaagtcgcctatttattt
ctaattgctgaaatgaaggtgtatgctgaaaaagctggaattgaaagcattaagcaattg
aagcaggaaatcagcattcttctcagggaaaaagtaagtagcggcgtagatggacaaaag
gtatttgagctaggatcaaagtacggccgtatggttggctttggtatggatggcaatcga
atgaagcttgtcttacacattaaaggtgtagaacaaagcaagtggttagacatcctcttt
gagatggctaaaggcttacaacatgtaaaaaaagaaattcaagcaacaaaaaattaa
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