Peribacillus butanolivorans: DTO10_20880
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Entry
DTO10_20880 CDS
T06699
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pbut
Peribacillus butanolivorans
Pathway
pbut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DTO10_20880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbut03019
]
DTO10_20880
Messenger RNA biogenesis [BR:
pbut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DTO10_20880
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
P8
Motif
Other DBs
NCBI-ProteinID:
AXN40595
UniProt:
A0AAX0S4A0
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Position
4314521..4316191
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AA seq
556 aa
AA seq
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MGKDKNNGIKVISLGGQGELGKNMYVIEVNEDLYLLDAGLMLPEEEMLGIDAVIPDISYL
MDNKERVQGIFITHGHEDHMGALAYVLKYLPVPVYGTKLTLALIKTKLKEDGFNGRATFT
EIDSDSLLSFPQAAVSFFRTNHSIPDSVGVVIHTRDGAIVYTGDFKFDQAATDLYKPEIG
KMASIGEEGVLCLLSDSTGAERPGYTPSEAVVSRDITEAFHAASGRIIVACFASNINRIQ
HVFNAAAASRRKVAVVGKSLQRVYETALNLGYLKVEEELIIPVNEINKYDDREIVVLSTG
HQGEPIAALQKMAKQTHKQVTIKKGDTVLISASPLQGGELILSKTVDLLYRVGAEVVSAS
KYKVHVTGHGSQEELKMMINLMNPKFLIPVHGEYRHLYAHQKVGIAAGIKRENIVIAEKG
DVIELKGDKMGLSGKVTAGNILIDGSGVGDVGNIVLRDRRLLSQDGILIVVVTLNRQDKS
IAAGPEIISRGFVYVRESEKMIGEATEIVSEIVKKNGSRQPFDWSTLKQEMRDALNQFFY
EKTKRRPMILPIIMEY
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
ttgggtaaagataaaaataatggaataaaagttatttctcttggaggacaaggggaactt
ggtaaaaatatgtacgtcattgaggtaaatgaagacctctaccttcttgatgcaggatta
atgctgccagaagaagaaatgttgggaattgatgcggtaattcctgacatttcttatttg
atggataataaagaacgggtacagggtattttcattacccatggtcatgaagaccatatg
ggtgcgcttgcttatgtattaaaatatttaccggtacctgtttacggtacaaagcttaca
cttgctttaatcaaaacaaaattaaaggaagacggctttaatggcagggcaacatttact
gagatcgattcagattctcttttaagtttccctcaagctgccgtatcctttttcaggaca
aaccatagtattcccgattctgtcggagttgtaatccatacgcgtgatggagccatcgtc
tatacaggggatttcaaatttgatcaagctgcaaccgatctttataaaccagaaatcggt
aaaatggcaagtattggagaagagggtgtcctttgcttgctatctgatagcacaggcgcg
gaaagaccgggttatacgccatctgaagcagttgtgtcaagggatattacagaagccttc
catgcagcttctggaagaattattgttgcttgctttgcttcaaatattaatcgaattcag
catgtcttcaatgcagcggccgctagtcgaaggaaagtggctgttgtgggtaaaagcttg
caacgtgtctatgaaacagccttaaatcttggatacttaaaggtcgaggaagagctgatt
atcccggtcaatgaaattaacaagtatgatgatcgtgaaatcgttgtattatcgactggg
catcaaggtgagcctattgcagcgcttcaaaaaatggcgaaacagactcataagcaggta
acgattaaaaagggagatacagtcttgataagtgcatcccccttacagggcggcgaactt
attttatcgaaaaccgtcgacttactttaccgggtaggtgcagaggtagtatctgctagt
aaatataaagtgcacgtaacgggtcatggcagtcaagaagaactgaaaatgatgattaac
ttgatgaatcctaaattccttatcccagtacatggagaataccgtcatttatatgcccat
caaaaagtaggaattgctgcagggataaaacgggaaaatatcgtgattgctgaaaaaggt
gatgtcatcgaactaaaaggtgacaaaatgggcctatccggcaaagtcactgcaggaaat
atcttaattgacgggagcggtgttggagatgtgggtaatatcgtactccgtgatcgtcgc
ttgttatcacaggatggcattttaatcgtcgttgtcacattgaaccgtcaagataaaagt
attgcagctggcccggaaatcatttcacgaggtttcgtatatgtacgtgaatcagaaaaa
atgattggggaagctactgagattgtaagtgaaatcgtgaagaaaaatggatcgcgccaa
cctttcgattggtctactctgaaacaggaaatgcgtgatgccttaaatcaattcttctat
gaaaaaacgaaacgccgtccaatgattttaccaataatcatggagtattaa
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