Paenibacillus bovis: AR543_03680
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Entry
AR543_03680 CDS
T04407
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pbv
Paenibacillus bovis
Pathway
pbv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AR543_03680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbv03019
]
AR543_03680
03016 Transfer RNA biogenesis [BR:
pbv03016
]
AR543_03680
Enzymes [BR:
pbv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AR543_03680
Messenger RNA biogenesis [BR:
pbv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AR543_03680
Transfer RNA biogenesis [BR:
pbv03016
]
Prokaryotic type
tRNA degradation factors
AR543_03680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
OB_Dis3
OB_RNR_1st
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ANF95215
UniProt:
A0A172ZC42
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All DBs
Position
841654..844320
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AA seq
888 aa
AA seq
DB search
MITEEQLLTFMRTDAYKPMTYQELEEHFQIEDASDFKELVKLLNKLEDAGDIVVNNANAY
GVPERMDLVRGRIQAHAKGFAFLIPEDREHGDVYINANDLNTAMNGDTVFVKVTSRNTSG
GRMEGVVVRVLVRKNTRIVGVFQALDTYAFVLPDDKRINRDIFIPKESFGGAVDGEKVVA
EIINYPEGRAAAEGRVIEVLGHKDDPGVDIISIIRKHQLPEAFPDEVMDEAQAAPDEITQ
EEIIQQGRRDLRGKNIVTIDGEDAKDLDDAVNVERLENGNYRLGVHIADVGYYVREGSML
DNEAYNRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTLSCEMEFDENMKVVNHDIFT
SVIKTKERMTYKNVRRILEDEDPELLERYAPLIDDFKLMRELAMQLRDKRIRRGAVDFDF
EESKIILDESGKPIDIVKRERSVAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHENPDQ
EKLQGFLAFAANFGHAVKGTGNLIHPRALQQLLEQIKGEKEETVISTMMLRSMKQAKYSA
ESTGHFGLAAEYYSHFTSPIRRYPDLVIHRVIREVIENGGSGLTPERQAYLESRMADIAQ
QSSERERVAVDAERDTDQLKKAEYMLDKVGQEFEGIISSVTGFGMFIELENTVEGLIRLG
MLTDDYYHFDDQHMILLGERTSRIFRIGDNITIRVANVNMDDHTIDFELPDMPKSNRRSG
GDRGARGGGDRGGRGGQGGQNGEKRSGGRGKNKNAKKAERFGKAAKAAKGAKTDKPAKAA
PAAASTPATPATGETAAAGKRKRKKDKGIAFSSSNASSPPARSFGFGSGKGGYDSPVISN
KKGSGRKKKATDAGPGSAVSPAAPKGEAGSGAGRPRRRKKKNKPQSPE
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgattacagaagaacaactattaacattcatgcgcactgacgcatataaaccaatgacg
taccaagagctggaagagcattttcagattgaagatgcctcggatttcaaagaactggtc
aaactgctcaataagctggaagatgccggcgatattgttgtaaataatgccaatgcttac
ggtgtgccggaacgtatggatctggtccgtggacggattcaggctcacgccaaaggattt
gctttcctgattccggaagaccgggagcatggcgatgtatatatcaacgccaatgatctg
aataccgccatgaacggcgataccgtattcgtgaaggtgacttcccgcaacacatccggt
ggacggatggagggtgtggtcgttcgtgtactcgtccgcaaaaatacccgtatcgtcggc
gtattccaggcgctggacacgtatgcttttgtactgccggatgacaagcggatcaaccgc
gatatctttattcccaaggagtcgtttggcggagcggtagacggcgagaaagtcgttgcc
gagattatcaactatccggaaggccgggctgcggcagaaggtcgcgttatcgaagtactc
ggtcacaaggatgatccgggtgtcgatattatctcgattatccgtaagcaccagctgccg
gaagctttcccggatgaagtgatggacgaggcgcaggctgccccggatgaaattacccag
gaagagattatccagcagggacgccgcgatctgcgcggcaagaatatcgttacgatcgat
ggcgaggatgccaaggatctggatgatgcggtcaacgtggagcgtctggagaacggtaac
taccgtctgggcgttcatatcgccgatgtaggctattatgtacgcgaaggctcgatgctg
gacaacgaagcctacaatcgcggctgcagcgtgtatctggtcgatcgggttattccgatg
ctgccgcatcgcctttccaacgggatctgtagtctgaatccacaggtggatcgtctgact
ctctcctgcgagatggagttcgacgagaacatgaaggtggtcaatcatgatatcttcacc
agcgtgatcaagaccaaagaacggatgacatacaaaaacgtccgccgtattctggaagat
gaagatccggaactgctggaacgctatgcaccacttatcgacgacttcaagctgatgcgt
gagctggcgatgcagctgcgtgacaaacggattcgccgcggcgcggttgattttgacttt
gaagaatccaagatcattctggatgaaagcggcaagccgatcgatatcgtgaagcgcgag
cgttcggtagccgagcagattattgaggaattcatgctggcagccaacgagacggtcgcc
gagcatttccactggctcaaagtgccattcctgtaccgtattcacgagaacccggatcag
gagaagctgcagggcttcctggccttcgctgccaactttggccatgcggtcaaaggcaca
ggcaatctgatccatccgcgcgcacttcagcagctgctggagcagatcaagggcgagaag
gaagagaccgtgatcagcacaatgatgctgcggtcgatgaagcaggcgaaatattctgca
gagagcacaggccactttggtctggcagcagagtactacagtcacttcacttccccgatt
cgtcgttatcccgatctggtcatccaccgggtgatccgcgaagtgatcgagaacggcggc
agcggcctcacaccggagcgtcaagcgtatctggagagccgcatggcggatattgcccag
cagtcttccgagcgcgagcgcgtcgcggtagatgccgagcgtgataccgaccagctcaag
aaggccgaatatatgctggacaaagtcggtcaggaattcgaagggattatcagcagcgta
accggcttcggtatgtttatcgagctggagaatacggtagagggtctgatccgtctcggt
atgctgacagatgactattaccatttcgacgatcagcatatgattctgctgggcgagcgt
acttcccgcattttccgtatcggggacaatatcacgatccgcgtggccaacgttaatatg
gacgatcatacgatcgactttgaactgccagatatgccgaaaagcaaccgccgttcgggt
ggtgaccgtggagcacgaggtggtggcgaccgcggtggacgcggaggccagggtggacag
aatggcgagaaacgtagcggtggcagaggcaagaacaaaaatgccaaaaaagctgagcgt
ttcggtaaagcggccaaagccgccaagggtgccaaaaccgacaagcctgccaaagcagca
cccgctgcagcttcaactccggctacaccggcaacaggcgaaacagctgcagccggcaag
cgtaaacggaaaaaagacaaaggcatcgccttctcatcatcgaacgcatccagtcctcca
gcccgcagctttggctttggttccggcaagggtggatacgacagtccggtcatttccaac
aaaaaaggtagcggacgcaagaaaaaagcgaccgatgccggtccgggttcagctgtgagt
ccggcagctcccaagggagaagcaggttcaggcgcaggacgtccgcgccgccgcaagaaa
aagaacaaaccacaaagtcctgaataa
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