Pseudoalteromonas sp. Bsw20308: D172_000910
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Entry
D172_000910 CDS
T04175
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Pathway
pbw03420
Nucleotide excision repair
pbw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D172_000910 (uvrD)
03430 Mismatch repair
D172_000910 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbw03400
]
D172_000910 (uvrD)
Enzymes [BR:
pbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D172_000910 (uvrD)
DNA repair and recombination proteins [BR:
pbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D172_000910 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
D172_000910 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
Viral_helicase1
AAA_11
DUF3553
SAP18
DEAD
Motif
Other DBs
NCBI-ProteinID:
ALQ06728
LinkDB
All DBs
Position
complement(226113..228278)
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSQLLDGLNDKQRDAVAAPLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAV
TFTNKAAKEMRSRVEETLKAPVGGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQL
RMIKRLLKSMNIDDKKWPAKQFGWYISAKKDEALRPKDIQAYDINEQMMLRVYAAYQEAC
DRAGLVDFAEILLRSYEVLKNNPTLLRHYQQRFAHMLVDEFQDTNTIQYAWLKLLAGDTS
SIMIVGDDDQSIYGWRGAKIENIKRFLTDFSAETIRLEQNYRSTATILKASNALIQNNSE
RMGKSLWTDGNDGEPISIYAAFNELDEARFVSSKLRSWLNAGNALQDAAILYRSNAQSRV
LEEAMLQEGLKYRIYGGMRFFERQEIKDALSYLRLVGNRQDDAAFERVINTPARGIGDKT
LSHIRDCARAESLPLWYAAKAIVEQQHLSGRASGAVSKFVELVEQIEDKISDLTLHEQAK
YTIQTSGLMAMYQAEKGEKGRARVENLEELISACDQYELPEDEEYSSPLQGFLAHTSLES
GEGQAEEHEDAVQMMTLHSAKGLEFPLVFMVGVEEGMFPSQQSNEESGRLEEERRLCYVG
MTRAMDKLYISHAESRRLYGQEKYHSPSRFLREIPEDCVEEIRIKTQVSRPPAAGRFSAS
VSHAAFEDSGFNLGQRVLHAKFGIGTVLNYEGSGAQSRVQVNFDDLGSKWLVTAYARLQA
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcacaattactcgatggcttaaatgacaaacaacgcgatgccgttgcagcc
ccactacaaaacatgctggtattagcaggtgctgggtctggtaaaacacgagtgttagtt
catcgtattgcgtggcttatgcaagttgagcaagcatctgcttacagtatttttgccgta
acctttactaataaagcggctaaagaaatgcgcagccgcgttgaagaaacactaaaagcc
cctgtaggtggtatgtggattggtacgttccatggtttgtcgcatcgtattttacgtgct
catcaccgtgaagctaacttacctgaagcctttcaaattttagactctgacgatcaactt
cggatgatcaagcgcttattaaaatcgatgaatatcgatgataaaaaatggcctgctaaa
caatttggctggtacataagcgctaaaaaagatgaagcacttcgccctaaagatattcaa
gcatacgatattaacgagcaaatgatgctgcgtgtttacgccgcctatcaagaagcctgt
gatagagctggtttagttgattttgccgaaatattactacgcagctacgaagtgttaaaa
aataaccctacgttactacgtcattaccagcaacgctttgcacatatgctcgtagacgag
ttccaagatacaaataccattcaatatgcttggttaaagttacttgcaggcgatacaagc
agtatcatgattgtaggcgacgatgaccaaagtatttacggttggcgcggtgctaaaata
gaaaatattaaacgatttttaactgactttagcgcagaaaccattcgtcttgaacaaaac
taccgttcaacagcaactattttgaaagcgtccaacgcattaattcaaaataactcagaa
cgtatgggtaaaagcttgtggaccgacggtaacgatggcgagccaatctctatttatgca
gcatttaatgagttagacgaagcacgctttgtgagtagcaagctacgaagctggttaaat
gcaggaaatgccttgcaagatgccgcaattttataccgtagtaacgcgcaatctcgtgta
cttgaggaggccatgctacaagaaggcttaaaataccgtatttatggtggtatgcgattc
ttcgaacgacaagaaattaaagatgcgttgtcgtacttacgtctagtgggtaatcgtcaa
gacgatgccgcatttgagcgtgtaattaatacgccagcacgcggtattggtgataaaaca
ttgagccatatacgcgactgtgcacgagcagaatcgttaccgctttggtatgccgcaaaa
gcaattgtagaacaacagcatttatctggtcgtgcttctggtgcagtaagtaagtttgta
gaactagttgaacaaatagaagataaaattagcgatctaactttgcatgagcaagccaag
tacacaattcaaacctcaggcttgatggcaatgtaccaagctgaaaaaggtgaaaaaggc
cgtgctcgcgtagaaaacttagaagaactaattagcgcatgtgaccagtatgagctacct
gaagacgaagaatacagctcaccactacaaggctttttagcccatacatcacttgagtca
ggtgaagggcaggcagaagaacacgaagacgccgtacaaatgatgacgcttcactcagct
aaaggcttagagtttccgctagtgtttatggtaggcgtagaagaaggcatgttcccttct
cagcaaagcaacgaagagtcgggtcgcttagaagaagagcgccgcctttgttatgtaggc
atgacacgagcaatggataagttatatattagccatgctgagagtcgccgcttatacggg
caagaaaaataccatagcccatctcgctttttacgcgaaatccctgaagactgcgtagaa
gaaatccgtattaaaacacaggtttctcgcccgcctgccgctgggcgttttagcgcatca
gttagccatgccgcatttgaagacagtggctttaacttaggacaacgcgtactgcatgct
aagtttggtattggtaccgtacttaattacgaaggcagtggcgcacaatctcgcgtacaa
gttaactttgacgaccttggtagtaaatggttagtaacggcttatgcacgattacaagcg
gtataa
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