Pseudoalteromonas sp. Bsw20308: D172_001730
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Entry
D172_001730 CDS
T04175
Name
(GenBank) RNA-binding protein hfq
KO
K03666
host factor-I protein
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Pathway
pbw02024
Quorum sensing
pbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D172_001730
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
D172_001730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbw03019
]
D172_001730
03036 Chromosome and associated proteins [BR:
pbw03036
]
D172_001730
Messenger RNA biogenesis [BR:
pbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
D172_001730
Chromosome and associated proteins [BR:
pbw03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
D172_001730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
ALQ06881
LinkDB
All DBs
Position
414139..414402
Genome browser
AA seq
87 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERIPVSIFLVNGIKLQGKIQSFDQFVILLENTVNQMVYKHAIS
TVVPARAVNFQGVQGDESTEEPEAGNF
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaggccaatcgttacaagacccatttttgaatgcactacgtcgtgagcgcatt
ccagtatcaatctttttggtaaatggcataaaattacaaggtaaaattcagtcatttgac
caatttgttattttacttgaaaacactgtaaaccaaatggtgtataaacacgcaatttca
acagttgtacctgctcgcgcagtcaacttccaaggtgttcaaggggatgagagcactgaa
gagccagaagctggaaacttttaa
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