Pseudoalteromonas sp. Bsw20308: D172_002600
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Entry
D172_002600 CDS
T04175
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbw03021
]
D172_002600
Transcription machinery [BR:
pbw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
D172_002600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
Helicase_RecD
DUF3885
Motif
Other DBs
NCBI-ProteinID:
ALQ07047
LinkDB
All DBs
Position
complement(613377..616271)
Genome browser
AA seq
964 aa
AA seq
DB search
MNFSLGQRWISDTESDLGLGTVVAIEGRQVSILFPASGENRVYSSAEAPVTRVAFNPGDV
IKSVEEWELEVESIEVQGELLCYHGTRVDNGETAKLKETFLDHFIKFNKPQDRLFAGQVD
RFDRYTLRYQTWLHKFEREQSPIKGLIGQRANLIPHQLYIAQEVGKRFAPRVLLSDEVGL
GKTIEAGMILHQQIISGRASRVLIVVPENLQHQWLVEMLRRFNLRFSIFDEERCDEAFAD
SPNVFDTEQLVLTSLEFLTKKKRWFEQATLADWDLLVIDEAHHLSINNGKPSSEYQRMAE
LSQDIPGLILLTATPDQLGHSSHFARLQLLDPDRFYDYDVFKEEEANYKDVAQAANQLLQ
EQALDDAAKATLIELLKETDITDILAKAQQGDLPARKEILNMLLDRHGTGRILFRNSRSG
IDGYPSRKLHAYPMALPKQYKTAMSVLGNMGGIQNPELSAHRALFPEKIFQEFEGESASW
GLFDPRVDWLIDTLKTLKREKVLLICAKAETAISLEQILREREAIKASVFHEGMSIIERD
RAAAFFADEYDNAQILLCSEIGSEGRNFQFSHHLVLFDLPLNPDLLEQRIGRLDRIGQTQ
DVNIHVPYFENTAQEVLLRWYNEGLDAFESTSTTGQMLYKEFRDDLLEYISAHNCDEDEL
DPLLEQVAQQNAVLRKKMESGRDRLLELHSSGQGAADSLVTDIEKLDNQFELPSYMINVF
DTFGVSQEDKGENTIILKPTEHMLSASFPSLKDDGMTVTFDRDTALSQEDVHFISWDHPM
VQGTMDMICDDDFGSASVALLKNKKLPPGTFFVELIFVAEAMAPKVLQVGRFLPPTPIRI
LLDKAGNNLGENVAFEGFNQQLSAVGRQTASKLAGALQSAVHPMITTAKDMAQEKLEVIR
AASLVKMQTSLSEEQERLVALKQINPNIRQEEITFYDKQRNDLTTYIEKTQLQLDAIRLI
VVSH
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttccttaggtcagcgttggatcagtgatacagagtcagatttaggattaggc
accgttgttgccattgaaggccgtcaggtcagcatattatttcctgccagtggtgaaaac
cgtgtttattctagtgcagaagcacctgttacccgtgtggcatttaatcctggcgatgtg
atcaaaagcgttgaagaatgggaattagaagtagagtctattgaagtacaaggcgagtta
ctttgttatcacggcacccgtgttgataatggcgaaacagccaagttaaaagagaccttt
ttagatcattttattaagtttaataaaccacaagatcgtttatttgcaggccaagtcgat
cgttttgatcgctacacacttcgctaccaaacgtggttacataaatttgaacgtgaacaa
tcgcctattaaaggcttaattggtcagcgtgctaaccttattccgcaccagctttatatt
gcccaagaagtgggtaaacgttttgccccacgcgtacttttatcagatgaagtaggcctt
ggtaaaacaattgaagcgggcatgatactacatcaacaaattattagtggccgtgcgagt
cgcgtactgattgtggtgcctgaaaacttacagcaccaatggttagtagaaatgctacgc
cgctttaacttacgtttttctatttttgatgaagagcgctgcgacgaagcgtttgcagat
tctccaaacgtatttgatacagagcaactagtacttaccagccttgagtttttaaccaag
aaaaaacgctggtttgaacaagcaacgcttgctgattgggaccttttagtaatagatgaa
gcccatcatctaagtatcaataacggcaagccaagctcagagtaccaacgtatggcagag
cttagccaagatattccgggccttattttgcttacagcaacgcctgatcaacttggtcac
agcagtcactttgcgcgtttacaattactcgacccggatcgtttttacgactacgacgtg
tttaaagaagaagaagcaaattataaagacgtagcgcaagctgcaaatcaattactgcaa
gagcaagctctggacgacgcagccaaagccacgctaattgagctattaaaagaaaccgac
attactgatattcttgcaaaagcacagcaaggtgatttaccagcgcgtaaagaaatactt
aatatgctgctcgatcgccatggcacaggtcgtatattattcagaaatagccgcagcggc
attgacggctacccaagccgtaaattacacgcctaccctatggcactgccaaagcagtat
aaaacggctatgtcggttcttggtaacatgggcggcattcaaaaccctgaactaagtgca
caccgtgccctgtttcctgaaaaaatatttcaagagtttgaaggcgaaagcgcaagctgg
ggtttattcgacccacgtgtagattggttaatcgacacccttaaaacacttaagcgcgaa
aaagtactgcttatatgtgctaaagctgaaacagctatcagccttgagcaaatactgcgt
gaacgcgaagcaattaaagcgtcggtattccacgaaggtatgtcgattattgagcgtgac
cgcgctgctgcattttttgcagacgagtacgataatgcacaaatattactgtgttcagaa
attggctcagaaggtcgtaacttccagttctcgcatcacttagtgttgtttgatttacca
ctgaatccagatttactcgagcaacgtattggtcgattagaccgtataggccaaacgcaa
gatgtgaacattcatgtgccatattttgaaaacaccgctcaagaagtactgctacgttgg
tataacgaaggcctagatgcattcgaatctacatcaacaacggggcaaatgctttataaa
gagttccgtgacgacctacttgaatatatttctgcgcataactgcgatgaagacgaactc
gatccattacttgagcaagtagcacagcaaaatgcagtactgcgtaaaaaaatggaaagt
ggacgagatcgtttactagagctacattcatcgggtcaaggtgctgcagattcgcttgtg
actgatatcgaaaaactcgataaccagtttgagttgccaagctacatgatcaacgtgttt
gatacatttggtgtaagccaagaagataaaggcgaaaacaccattatcttaaagccaacg
gaacatatgttaagtgcctcattcccatcgcttaaagacgatggcatgacggttacgttt
gatcgcgacacggcactttcgcaagaagacgtacactttatcagctgggatcaccctatg
gtgcaaggcactatggatatgatttgtgacgatgactttggtagcgcatcagttgcactg
cttaaaaacaaaaaattaccgcctggcaccttttttgttgagcttatttttgttgcagaa
gcaatggcaccaaaagtattacaagttggtcgctttttaccacctacaccaattcgtata
ttgctcgataaagcaggtaataacttaggtgagaatgtggcatttgaaggctttaatcag
cagctatcagccgttggccgccaaacagcaagtaagcttgccggtgcactacaaagcgct
gttcaccctatgatcacaaccgctaaagatatggcacaagaaaaacttgaagttattcgc
gcagcgtcgcttgttaaaatgcaaacatcactcagtgaagagcaagagcgacttgttgca
cttaagcaaattaacccaaatattcgccaagaagaaataacgttttacgataagcaacgc
aacgacctaactacgtatattgaaaaaacgcagttacaacttgatgccattcgactaata
gtggtttcgcactaa
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