Pseudoalteromonas sp. Bsw20308: D172_005900
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Entry
D172_005900 CDS
T04175
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Pathway
pbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D172_005900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbw03019
]
D172_005900
03009 Ribosome biogenesis [BR:
pbw03009
]
D172_005900
Enzymes [BR:
pbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D172_005900
Messenger RNA biogenesis [BR:
pbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D172_005900
Ribosome biogenesis [BR:
pbw03009
]
Prokaryotic type
rRNA helicases
D172_005900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ALQ07649
LinkDB
All DBs
Position
complement(1382638..1384482)
Genome browser
AA seq
614 aa
AA seq
DB search
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSA
LRRGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREK
QTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASVHKNKAIVRFLEA
EQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNIVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVELPTAKIVEEKRIEALQAKLTIALENKDITFFNEVATNMAEKLDLPLESLA
GALLCLAQQQSPIKVEEVKIQPRERNERNDRNSRNDRGDRGRRNERGGERGGERAERKPR
ERNSRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDNHSTVQLPQN
MPKDVLDHFQKVFICKRPMGLTITTDQGPAEPRGERSERPAGDKKRSFNKDDGARGDKRS
GPRKERRPVSFTAK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaattttgaaggcagtt
gaagagttgggttacaagacaccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagctcaaacgggtacaggtaaaaccgcagcatttgca
ctgccattactaaataatattgacccgtctgtgaaacagccacagatccttgtactcaca
ccaacacgtgagcttgcgatccaagttgctgaggcattcgaacaatatgctaaacatgtt
cgtggtattgaagtattggcactctatggtggccaaagctacagtatccaattaagcgca
cttcgtcgtggcgctcaggttattgttgcaactccaggtcgtttaatcgatcacattaac
cgtggcactatcaagtttgatgctctacaagcacttgtacttgatgaagccgatgaaatg
ttacgtatgggctttatcgatgatgtagaaaacatcatggaaaaaacaccgcgcgaaaag
caaacatgtcttttctctgcgactatgcctaagcaaattcaaaacatcagcagcaaatat
atgaacaatcctgaacaggttcatatttctgcgcgtaactcgacagtatcatctgttgag
caagtgttttggaatgcaagcgtacataaaaataaagcaattgttcgcttcttagaagct
gaacaatatgaaggtgctattgttttcgttcgtacacgtaacgatacagtacaacttgct
gagttattagagcgcgaaggtttctctgctgctccacttaacggtgacatgaaccagcaa
gcacgtgaacgcactgtagatcgcttaaaaagtggcatgctaaacattgttattgcaaca
gatgtagcagctcgtggtctagatgttgaccgtttaagcttagttatcaactacgatatc
ccacaagattctgaagcctacgttcaccgtatcggccgtacaggtcgtgctggtcgtact
ggtaaagcaatcttattcgtgaaacataacgaacgttatttacttaaaaatatcattcgt
catacgaagtctgaaattgctcaagttgaattaccaacagcaaaaattgttgaagaaaaa
cgtattgaagcgttacaagcaaaattaactattgcgcttgaaaacaaagacatcacgttc
ttcaatgaagtagctactaacatggctgaaaaacttgaccttcctcttgaaagcttagcg
ggtgcgttactgtgtttagcacagcaacagtcgccaattaaagttgaagaagttaagatt
caacctcgtgaacgtaacgagcgtaacgaccgtaattcacgcaacgaccgtggtgaccgt
ggacgtcgtaacgaacgtggcggcgaacgtggtggtgaacgcgctgagcgtaaacctcgc
gaacgtaacagccgtgatgcaggtcctatggatacttaccgtatcgaagtaggtcgtgaa
catggtgttcaggttaaaaacattgttggcgctatcgctaacgaagctgacatctcaagc
aagtttattggtgatattcgtctacacgacaatcacagcacggttcaattaccgcaaaac
atgcctaaagatgtacttgatcacttccaaaaagtgtttatttgtaaacgccctatgggc
ttaacaattaccactgatcaaggccctgctgaaccacgtggcgaacgctctgagcgtcca
gctggtgataagaaacgcagctttaataaagatgacggcgcacgcggtgataagcgcagc
ggtcctcgtaaagaacgtcgcccagtaagcttcacagctaaataa
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