Pseudoalteromonas sp. Bsw20308: D172_006800
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Entry
D172_006800 CDS
T04175
Name
(GenBank) exonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Pathway
pbw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
D172_006800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbw03400
]
D172_006800
Enzymes [BR:
pbw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
D172_006800
DNA repair and recombination proteins [BR:
pbw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D172_006800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
NTase_sub_bind
Motif
Other DBs
NCBI-ProteinID:
ALQ07784
LinkDB
All DBs
Position
1574999..1578562
Genome browser
AA seq
1187 aa
AA seq
DB search
MQALNPLTMPLIGQSLIEASAGTGKTYTITGLYLRYLLGMQIEGELNTPLSVEQILVVTF
TDAATQEIKDRVRSRIIAARDALLGQDPNDELIEGVIAKIDDKHRAFDLLDAAAKSMDEA
AIFTIHGFCQRMLKQHAFESGVAFNLEFILDERDILLETIKDFWRAFVYPLNKERTDAIL
DVFAAPEALFAQVASILNKANAHITPQINLDDVWKARDKYITRVPAFKKAVLEQEFIGAI
KSSGLSGSKTPARKGSLGALEAFCLGGDLFFEFGTNKYSFEVWSTENLSDVANYKKNQPL
FVHPLLSQFDELAALNNTINQGLKIAVVQHAARWVKAAIVKRKQEQSVITPDDLLTNLHS
ALNNEQGDVLAQKIAQLFPVAMIDEFQDTDPIQYGIFSKIYGQQNTTLAMIGDPKQAIYG
FRGADIFTYIGAKEAVQSDQQFTLGTNFRSSTDIVNSVNSLFGKHANSFIYNDAIPFNAV
AAKGKKAEDSFLIDGKPATAFEFNVFVDEAADEKNKPTNKGVGQAHLATHFANKIVTLLE
KAKQGDACIGSTPVSAADICILVRDRVEAQIMKKALDDAKISSVYLSRESVFSQELSHHL
LNFLTALHGQYDESLLRGVLAGPLFCLSYNEIHALADDENKWQDYLNFFAQLSHIWNKQG
AMAMLERLMSHNQLSAKWQGLGYNVERWLTDFRHLGEILQQKQIELEGTLRLLRWFAQKV
SQQDGETVQVRLESDANLVKIVTMHASKGLEYPLVFMPFASGYRETKEALYHNNGKLVYD
LSKDEDALQKAEQERLAEDLRLLYVALTRAVHFCALGVYNIGQGQSSRLAMQSSALGHVL
FAGLELASSQTWRTHLSEFCDANSAMSYQQFTSQTLLEQGTLCFNNSESAQQTLSVNKVT
ANIERNWRATSFSALSFKKHSDQLAPGRSDEDHEKDEFAVQEDEIPSPYSFPKGPKPGSC
LHEIFEQIDFISPIVHPTNTEQNLSEVVKRSLEKYHIGEQWQEVAEKWVLDVLACPLNEG
LLSLGVLTPGDCLVEMEFNLPLESLSAPKLNEILIKHFGFAQSKLEFSQVKGLLKGFVDL
IFCYQGKYYILDYKSNYLGSTPADYESDMLEQAMSSHQYHLQYLIYTVALHRLLKQRIAD
YSIETHLGGVYYTFLRGMPAGQGVYFKKLTVEQVIILEGLFSQGAML
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgcttaatcctcttactatgccgctcattggtcaaagtttaatagaagccagt
gccggtactggtaaaacttatacaattacggggctgtatttacgttacttactaggcatg
caaatagaaggtgagttaaatacgccgctcagtgttgagcaaattttggtagtaaccttt
accgacgctgccacccaagaaattaaagaccgcgtacgcagccgaattattgctgcgcgc
gacgcattgcttgggcaagacccaaacgacgaacttattgaaggcgtaattgccaaaatt
gatgataagcaccgcgcgtttgatttactcgatgcagctgctaaatcaatggacgaagcc
gctatttttactattcatggcttttgtcagcggatgctaaagcaacatgcgtttgagtcg
ggtgtggcgtttaatctcgaatttattttagatgagcgcgacatattactcgaaactatt
aaagatttttggcgggcatttgtatacccacttaataaagaacgcaccgatgctatttta
gatgtatttgccgcacccgaggctttattcgctcaagtggcgagcattttaaacaaagct
aatgcgcacattacaccacaaataaatttagatgatgtatggaaagcccgtgacaagtac
ataacccgtgtgcctgcatttaaaaaagcggtgttagagcaagagtttatcggtgctatt
aaaagctcgggtttaagcgggtctaaaacgccagcacgaaaaggcagccttggtgcgctt
gaggcattttgtttaggcggcgatttgttttttgaatttggcactaacaagtattcgttt
gaagtgtggagtacagaaaacctaagcgatgtagctaattataaaaaaaatcagccatta
tttgtgcatccattactgagtcagtttgacgagcttgccgcacttaataacaccataaac
caaggactcaaaatagcagttgtacaacatgcagcacgctgggtaaaagccgcaatagtt
aagcgcaagcaagagcaaagcgtgatcaccccagatgacttattgaccaatttacacagt
gcgcttaataacgagcaaggcgacgtactagcgcaaaaaattgcgcagttgtttccggtt
gccatgattgatgaattccaagataccgatccgattcagtacggtatttttagtaaaatt
tatgggcaacaaaataccacgcttgccatgataggcgaccccaagcaggctatttatggc
tttaggggcgcagatatttttacgtacattggcgcaaaagaagctgtacaaagtgatcag
caatttacgctggggactaactttcgctcaagcaccgatatagtcaatagcgttaatagt
ttatttggcaaacacgctaacagctttatttataacgacgctataccgtttaacgcagta
gctgctaaaggtaaaaaagcggaagactcttttttaattgatggcaaacccgcgaccgca
ttcgaatttaatgtatttgtggatgaagccgcagacgaaaaaaacaaaccaaccaacaaa
ggtgtagggcaagcacatttagccactcactttgctaataaaatagtgaccctgcttgaa
aaagcaaaacaaggggatgcgtgtattggcagtacccctgtaagcgctgccgatatttgt
atattagtgcgcgaccgtgttgaagcgcaaataatgaaaaaagcgctagatgatgccaaa
atttccagcgtgtatttatcgcgagaaagcgtttttagccaagagcttagccatcaccta
cttaactttttaacagcgctgcatggtcaatatgacgagtcattgctgcgcggtgtttta
gctggtccgctattttgtttaagttataacgaaatacatgcactcgccgatgatgaaaat
aaatggcaagactacttaaacttttttgcacaacttagccacatttggaacaagcaaggc
gctatggcaatgcttgagcgcttaatgagccacaaccaacttagcgctaaatggcaaggt
ttaggatataacgttgagcgttggctgacggactttaggcatttgggcgaaatacttcag
caaaagcaaatagagcttgaaggcacgctgcgtttgctgcgatggtttgcacaaaaggta
agccaacaagacggtgaaacagtacaagtgcgcctagaaagtgacgccaacttggttaaa
attgtcactatgcatgcttcaaaagggcttgaataccctttggtatttatgccgtttgcc
agtggctatcgcgaaacaaaagaagcgctttatcataataatggcaagctagtttacgat
ttaagtaaagacgaagatgcccttcaaaaagcagagcaagaacgcctagctgaagattta
cgcctgctatatgtagcacttactcgcgccgtacatttttgtgcgcttggtgtttataac
atagggcaaggacaaagtagccgcttggctatgcaaagtagtgcacttgggcatgtttta
tttgcagggcttgaacttgccagtagccaaacatggcgcacgcatttaagtgagttttgc
gacgctaacagcgcgatgagctatcagcaatttacctcacaaacattattagagcaggga
acactttgttttaataacagtgaaagtgcgcagcaaacgttaagtgttaataaagtaacg
gcaaatattgaacgtaactggcgagcaactagctttagtgcgttgagctttaaaaagcac
agcgaccaattagccccagggcgaagtgatgaagatcacgaaaaagacgagtttgcagtg
caagaggacgaaataccatcaccttatagttttcctaaagggccaaagccgggtagctgt
ttgcatgaaatatttgaacaaatagattttattagcccaatagttcacccaactaatacc
gagcaaaacttatctgaggtagttaagcgcagtcttgaaaagtatcacataggtgagcaa
tggcaagaggtggctgaaaaatgggtgcttgatgttcttgcgtgtcctctaaatgagggg
cttctttcattgggtgtgcttacaccaggtgactgcctagtcgaaatggaatttaattta
cctcttgagagtttaagcgcacctaagctaaacgaaatactgattaaacattttggtttt
gcacaaagtaagcttgaattttcgcaggtgaaaggcttgttaaaaggctttgtcgattta
atattttgctaccaaggtaaatattatattttagattataagtctaattatttaggtagc
acgcctgctgattacgagagcgacatgcttgagcaagcgatgagcagtcatcagtatcat
ttacagtatttaatctacacggtagcactgcatcgcttattaaaacaacgcatagctgat
tactcaatagaaacccatttaggcggtgtgtattacacctttttacgtgggatgccggca
gggcaaggcgtgtactttaaaaagctaactgtagagcaagtgattattttagagggctta
tttagccaaggagccatgctatga
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integrated database retrieval system
