Pseudoalteromonas sp. Bsw20308: D172_006905
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Entry
D172_006905 CDS
T04175
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Pathway
pbw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D172_006905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbw03400
]
D172_006905
Enzymes [BR:
pbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D172_006905
DNA repair and recombination proteins [BR:
pbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D172_006905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALQ07804
LinkDB
All DBs
Position
complement(1602255..1605728)
Genome browser
AA seq
1157 aa
AA seq
DB search
MAFEQWAALPWVKSQKDKIQWGQLSGSGLSIAIAEGVKQQDNLVLIVTPDTPSALRLETE
LEYLLPDNPVMVFPDWETLPYDHFSPHQDIISARLATLNTLKKEQQSVLIVPVSTLMLRT
APASFIYGSTINFKVGDKLDTHNFRDNLEQAGYLNVQQVMEHGEYAIRGSIVDLYPMGSP
HPFRLDFFDDELDTIRLFDVETQRSDEKVDKIELLPAHEFPTNDADIERFRISYREKFGA
SSQQDSVYMQVSKGNWPAGIEYYMPLFFEKLATIFDYLPDTTTVMQLGDLEHAADNFWHD
VNVRYENRRVDPLRPLLEPNALYQPIEELFSNLGNFARIRLSLAKLGTKAGNKNLSVSEL
PTIRIDHKQHEPYGAFINYVAEQKKKKGRILLSVESDGRRESLLSILKPSGLKFKEFETL
EQFTKSASDVGLIVSPLEQSVVLGTKPSLSIITEQELLGIKVSQRRRRKHKYEASQDALI
RNLAELKEGQPVVHLDHGVGRYQGLQTIDAAGVVTEFVTITYASEAKLYVPVSALHMLSR
YSGGEEASAPLHKLGSDAWEKAKKRAAEKVRDVAAELLDIYAQRQAKPGNKFTLDAPAYR
QFSDSFPFEETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDDKQ
VAILVPTTLLAQQHYENFKDRFADFPIEVGVLSRFNSTKEQKDTLEKMANGKLDIVIGTH
KLIQHDIKFNDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRQRDVELIREAVLREIKRGGQVYFLHNNVETIERVAQEISE
WVPEASVTTAHGQMREQELEQIMTDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLE
IRGAGELLGDDQSGQMQTIGFSLYMEMLEQAVNALREGKEPTLENLLQKQTEVDLKLAAL
LPDDYIHDVNARLGMYKRVASCANLDDMDELQVELIDRFGLLPDAAKNLFSLQQLKMQAS
NLGITKIEANPKGGYFEFSQDTKVNPSFIIGLIQSAPKVYKMDGANKLRFAISEANARER
LKMVTAMIADFEKKVSH
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgagcaatgggcagccttgccttgggtaaaatctcaaaaagataaaattcaa
tggggccagctaagcggaagtggtttaagtattgccattgctgaaggcgttaaacaacaa
gacaacttagtcttgattgttacgcctgatacaccaagcgcactacgccttgaaacagaa
ttagaatatttattacccgataacccggtaatggtatttcctgattgggaaactctgcca
tacgatcacttttctccccatcaagatattatttcagcccgtttagccactttaaatacc
ttaaaaaaagaacaacaaagtgtgttaattgtgcctgtatctaccttaatgttgcgcaca
gccccagcctcgtttatttacggttcaacaataaactttaaagtgggcgacaagctagac
acacataactttcgtgacaacttagagcaagctggttatttaaatgttcaacaagtaatg
gagcacggcgaatacgctatacgcggctctatcgttgacttatacccaatgggtagcccg
cacccatttagactcgatttttttgatgacgaactcgataccattcgcttatttgatgta
gaaacgcagcgttctgatgaaaaagtagataaaattgagctacttccagcgcatgaattt
cctactaacgacgctgatattgaacgttttagaataagctaccgtgaaaaatttggcgca
agctcgcagcaagactcagtatacatgcaagtaagcaaaggtaactggcctgcaggtatt
gaatactacatgccgttgtttttcgaaaagctagcgactatttttgactacctgccagat
acaacaaccgttatgcagctgggtgatttagagcatgcggcagataacttttggcacgat
gtaaatgtacgctatgaaaaccgcagagttgacccacttcgtccattacttgaacccaat
gcactttatcagcctattgaagagctgttttctaatttaggcaattttgcacgtattaga
ttatcccttgcaaagcttggtactaaagcaggcaataaaaacttaagcgttagcgagctg
cctactattcgaatcgaccataaacagcatgaaccttatggcgcgtttataaattatgta
gcagaacaaaaaaagaaaaaaggccgtatattactcagtgttgaatcagatggtcgtcgt
gaatcattgctgagcattttaaaaccaagcggtttaaaatttaaagaatttgaaacactc
gaacaatttacaaaaagcgcgagtgacgtaggcttaatagtaagtccgcttgagcaaagt
gtagtacttggtactaaaccaagcctttctattattaccgagcaagaactgcttggtata
aaagtatctcagcgcagacgccgcaagcacaagtacgaagccagccaagatgcgctaatc
cgtaatttagctgagcttaaggaaggccaacctgttgtgcatctcgatcatggtgttggc
cgttatcagggtttgcaaacaattgatgctgcaggtgtagttactgaatttgtaacaatt
acttacgcaagtgaagctaaactttacgtgccagtatctgcattgcatatgcttagtcgt
tactctggcggtgaagaagctagcgccccgctacataagcttggctcagatgcatgggaa
aaagcaaaaaaacgtgcggctgaaaaagttcgtgatgtagcagcagaattactcgacatt
tatgcacagcgccaagcaaaacctggtaataaatttaccctagacgcccctgcatatcgc
caatttagcgatagcttcccgtttgaagaaacagacgatcagcgcaacgccatagaagca
gtgttaggcgatatgcaatcaaaacaagccatggaccgcttagtgtgtggtgacgtaggc
tttggtaaaacagaagtagccatgcgcgctgcttttgtagcagttaacgatgataagcag
gtagctattttagtgcccaccaccctgctggctcaacaacactatgaaaactttaaagac
cgctttgctgattttcctattgaagtaggtgtactttcgcgttttaactccactaaagag
caaaaagacacgcttgagaaaatggccaacggtaagctcgatatagttattggtacgcat
aaacttattcaacatgacattaagtttaacgatttaggcttgttaattgttgatgaagag
catcgctttggtgttcgccaaaaagagaaaattaaagcactgcgcgctgacgtagacata
ctcacactgactgcaacgccaatacctcgtacacttaacatggccatgagcggcatgcgc
gatttatcaataatcgcaacgccgcctgctaaacgtttagcggtaaaaacctttgtgcgt
caacgcgatgtagaactaatacgcgaagcagtactgcgagaaattaaacgcggtggccaa
gtttactttttgcataacaatgtagaaactattgagcgtgttgcacaagaaattagtgaa
tgggtgccggaagcgagtgtgactacagctcatggccaaatgcgcgagcaagagcttgag
caaataatgactgacttttatcatcaaaaatacaacgtgctggtatgtaccacaattatc
gaaacaggtatcgatgtacctacggccaataccattattatggatagagcagataaactc
ggccttgcgcaattacaccaattacgtgggcgagtgggtcgaagccaccatcaagcgtat
gcctacttactaacaggtgaccctaaagcgctttctaaagatgcgagcaaacgcttacaa
gcaatcgaatcgttagaagatttaggtgcaggttttgccctcgctacacacgatttagaa
atacgtggtgcgggtgagttacttggcgatgatcaatcaggtcaaatgcaaaccatcggc
tttagtttgtatatggaaatgctcgaacaagcagtaaatgcgctgcgcgaaggtaaagaa
ccaacgcttgaaaacctacttcaaaaacaaaccgaagtagatttaaaactggctgcatta
ttacctgatgactacatacacgatgtaaatgcacgcttaggtatgtacaagcgcgttgct
agttgtgctaaccttgatgatatggatgaactacaggtcgagttgatagaccgttttggt
ttgctgcctgatgctgctaaaaacttatttagcctgcagcaacttaaaatgcaagccagt
aatttaggcattacaaaaattgaagcgaaccctaaaggcggttactttgagtttagccaa
gataccaaggttaaccctagcttcatcattggcttgatacaaagtgcgcctaaggtttac
aaaatggatggcgcaaataaactgcgctttgcaattagtgaggcaaatgcccgcgaacgc
ttaaaaatggtcactgcaatgattgcagatttcgaaaaaaaggttagccattaa
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