Pseudoalteromonas sp. Bsw20308: D172_011275
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Entry
D172_011275 CDS
T04175
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbw03019
]
D172_011275
Enzymes [BR:
pbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D172_011275
Messenger RNA biogenesis [BR:
pbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D172_011275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
ResIII
UvrD-helicase
AAA_25
Cas3-like_C_2
NACHT
NTPase_1
HA2_N
AAA_23
SLFN-g3_helicase
DUF3405
DUF6139
Motif
Other DBs
NCBI-ProteinID:
ALQ08599
LinkDB
All DBs
Position
complement(2609354..2613247)
Genome browser
AA seq
1297 aa
AA seq
DB search
MRVVNLGQLFGELKTCLKKDQFIFKKRLHGVKKITDENKHANALEKIAADITRSQELRDK
RLAGLPKVTYPEQLPVSQKKELIKDAIANNQVVIIAGETGSGKTTQIPKMCLELGRGVDG
LIGHTQPRRLAARTVANRIAEEMKCELGQQVGFKIRFSDQVSNNTYVKLMTDGILLAEIQ
QDRFLNQYDTIIIDEAHERSLNIDFILGYLKNLLPKRPDLKIIITSATIDPERFSKHFDD
APIIEVSGRTFPVDVRYNPITDINKDDMEAEGDQLQGIFDAVDELCAEGPGDILIFLNGE
REIRDTADALSKRNLKHTDVLPLYSRLSNAEQNRIFAPHSRRHIILSTNVAETSLTVPGI
RYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRMGRCGRVEAGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMLALGLGDMAQFPFVQAPDSRNISDGLSLLEELQAVKPDKR
DNKTSLTASGRELSRLPVDPRLAKMVLTAHKLGALREVIIIVAALSIQDPRERPQEKRAA
ANEKHGRFDDPDSDFIAFLNLWNYLEEQQSELTNGQFRKLCQKDFLAYMRLREWQDIVYQ
ISTVCNEMGMKATSQAADGELVHKALLSGMLSHIGFKDEKQIYKGARNSQFHIFPGSGLF
KKSPKWIMSAELVETSKLYARTNAKIDINWVEPLAQHLVKRSYTEPHWEKKPGAVIAFEQ
QTLYGLLVVNKRRCVYSNIDPKVSRELFVRTALVEQELGLNERFLAFNSELIEDIQVLEN
KSRRRDILVDEQTLFEFYDKKIPKEINNRAAFLKWYKTQKQQNKHYLHMTREELMQHGAS
NITEFDYPDTWQQDNIILPLAYHFDPGQAVDGVAVQIPVALLNQVQESGFDWHIPAFRHE
LISGLIKSLPKSLRRNFVPAPNYADAVLAAIEPMQGSLIDALTTRLLRMTGVKVDPEAWD
LTALAPHLRLQFEVRDEHDKLLARGLDLAKLKAELQGEVTETLSKVADKGIEKSDLTQWD
FGELPASYVKKQGQYEIKAYPALVDKKSAAAVELFDNEAKAQQAHQQGLRRLVLLNVPSP
IKYLQQNLPNKAKLGLYFNPFGKIADLIDDCIAAGVDSLLVKHGDIRDEKAFETVKEQIR
GELGDAVVSIATQVEQVLSIAHALHKKMKGRVDLTMITAHGDIKSQLESLIFKGFVSAHG
ADKITDLIRYLKAIQKRLEKLPVDPNRDRLCVLELDKVAIEYKKLTNKTPKGLPIPQEVT
AIFWMQQELRVSLFAQTLGTPYPISSKRILNAIKEIE
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtggtaaacctaggtcagttgtttggcgagctaaaaacgtgcttaaaaaaagat
caattcattttcaaaaaacgcttacatggcgtaaaaaaaataaccgatgaaaacaagcat
gccaacgcgcttgaaaaaatagcggctgatataacccgtagccaagaattacgcgataag
cgcctagctggcctccctaaagtgacttaccctgagcaattgccagtaagtcaaaaaaag
gaattaattaaagacgccattgcaaataaccaagtggttattattgccggtgagacgggc
tcaggcaaaacaactcaaatacctaaaatgtgtttagagcttggtcgtggtgttgatggt
ttaatagggcatacgcaaccacgccgattagcagcgcgtaccgtggctaatcgtattgct
gaagaaatgaagtgtgagcttggtcagcaagttggctttaaaatacgttttagcgatcag
gtttctaataatacgtatgtaaaactgatgactgacggtattttactggcagaaattcag
caagaccgctttttaaatcaatacgacacgattattatcgatgaagcgcatgagcgtagt
ttaaacatcgactttattctaggttacttaaaaaacctacttccaaaacgccctgattta
aaaataataattacctcagcgactattgatcctgagcgcttttcaaagcactttgatgat
gcgcctattatagaagtatcgggtcgtactttcccagttgatgtgcgctacaaccctatt
actgatattaataaagatgatatggaagccgagggcgatcagctacaaggtatttttgat
gccgttgatgagctgtgcgctgaaggccctggcgatattctcatatttttaaatggtgag
cgtgaaatacgcgataccgctgatgcacttagcaagcgtaatttaaaacacaccgatgta
ttgccactttattcgcgcttatctaacgcagagcaaaaccgtatatttgcgccacattct
cgtcgccatattattttatcgactaacgtagccgaaacgtcactcaccgtgccgggtatt
cgttatgtaatagacccaggtactgcgcgtataagtcgctacagctatcgtacaaaagta
cagcgcttgccaatagagcctatatcacaagcaagtgctaatcagcgtatgggtcgttgt
ggacgtgttgaagcgggtatttgtattcgcttgtactctgaggatgattttttatcgcgc
ccagagtttaccgaccctgaaatactgcgtactaaccttgcgtctgttattttacaaatg
ttggcactcgggcttggtgatatggcgcaatttccgttcgtgcaagcgccagatagccgt
aatataagtgatggtctatcgttattagaagaactacaagcagtaaaaccagacaaacgt
gataacaaaacgagtttaaccgcttcaggtagagagcttagccgattaccggttgaccct
cgtttagctaaaatggtacttacggcccataaacttggcgcattgcgtgaagtgattatt
attgtggcagcattgtctattcaagacccacgtgaacgcccacaagaaaaacgtgctgcg
gccaatgaaaagcacggtcgttttgacgacccagattcagattttattgcttttttaaac
ttatggaattacctagaagagcagcaaagcgagctgactaacggccaatttagaaagctg
tgtcaaaaagactttttggcctatatgcgtctgcgtgaatggcaagatattgtttatcaa
ataagtactgtgtgtaacgaaatgggcatgaaagcaaccagccaagcggctgatggcgag
cttgtgcacaaggcgttattaagcgggatgctaagccacattggcttcaaagatgaaaaa
caaatatacaaaggcgcacgtaatagtcagtttcatatttttccgggttcaggtttattt
aaaaagagccctaaatggatcatgtcagcagagctggtagaaaccagtaaattatatgcc
cgcacaaatgcaaaaatagacattaactgggtagagccattagcacaacacctagtaaaa
cgtagttacacagaacctcattgggagaaaaagccaggtgcggtaattgcgtttgagcag
caaactttgtacggcctactcgttgtaaacaaacgccgctgtgtttatagcaatattgac
cctaaagtgagccgagagctttttgtacgcactgcattagttgagcaagaactgggctta
aatgagcgctttttagcctttaacagtgagctaatagaagatattcaagttctggaaaat
aagtcacgtcgtcgtgatattttagttgatgagcaaacgttatttgaattttacgataaa
aaaatacccaaagaaattaataaccgcgctgcatttttaaaatggtataaaacacaaaaa
caacaaaataagcattacttacacatgactcgtgaagagttaatgcagcatggtgcaagt
aatataaccgagtttgactaccctgatacatggcaacaagacaatattatattgccgctt
gcttatcattttgatccaggccaagcagttgatggcgttgcggtacaaataccggtcgcg
ctgttgaatcaagtgcaagaaagtggttttgactggcacataccagcatttaggcatgag
ctaataagtggacttataaagtcattgcctaaatcgcttcgtcgtaattttgtgccagca
ccaaactatgctgatgcagtgctggcagctattgagccaatgcaagggagcttaattgat
gcattaacgacgcgtttattgagaatgacaggtgtaaaagttgatccagaggcatgggat
ttaaccgcgcttgcaccgcatttaagattgcagtttgaagtacgtgatgaacacgataag
ttacttgctcgtggacttgatttagccaaacttaaagcagagctgcaaggtgaagtaacc
gaaacactctctaaagtagccgataaaggcattgaaaaatcagacctaacacaatgggat
tttggtgagttacccgcttcatacgttaaaaagcaaggtcaatatgagataaaagcatac
cctgcgctggtggataaaaaatcagccgctgcagtggagctgtttgataacgaagcaaaa
gcgcagcaagcacatcaacaaggtttgcgccgtttagtgttattaaatgtgccatcgcca
attaagtatttacaacaaaacttaccgaataaagcaaagctgggtttgtactttaatcca
tttggtaaaatagctgatttaattgatgactgtatagccgcaggtgtcgatagcttatta
gtaaaacacggtgatatacgcgacgaaaaagcatttgaaacagtaaaagagcaaatacgc
ggtgagctcggtgatgctgttgtgtcgattgcaacgcaggttgagcaagtattaagtatt
gctcacgcgctgcataaaaaaatgaaagggcgcgttgatttaaccatgataacggcgcac
ggcgatataaaatcacagcttgagtcacttatatttaaaggttttgtgagcgcgcatggc
gcagataaaataacggatttaatccgttacctaaaagccattcaaaaacgcttagaaaaa
ttaccagttgatccaaacagagataggttatgcgtacttgaacttgataaagtggcaatt
gaatataagaaattaactaataaaacacctaaagggttgccaattccccaagaagtaacc
gctattttttggatgcagcaagaactaagagtctctttgtttgcccaaacattaggaact
ccatatcctatttcatcaaaacgcattttaaatgcaataaaagaaatagaataa
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