Pseudoalteromonas sp. Bsw20308: D172_018400
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Entry
D172_018400 CDS
T04175
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Pathway
pbw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D172_018400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbw03400
]
D172_018400
DNA repair and recombination proteins [BR:
pbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D172_018400
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D172_018400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
SMC_N
nSTAND1
AAA_15
AAA_29
DnaJ_CXXCXGXG
AAA_16
RsgA_GTPase
nSTAND_NTPase5
AAA_33
AAA_30
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ALQ10056
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Position
pPBSW1:complement(260341..262899)
Genome browser
AA seq
852 aa
AA seq
DB search
MASTHKNSTTDLSDPSNSIQVRGARVHNLKNVDVDLPRNALVVFTGISGSGKSSLAFGTL
FAESQHRYLDSVSPYARRLIDQVDEPDVDSIEGLPPAVALQQQRGAPSVRSSVGSITTIS
NALRMLYSRAGDYPAGQSILYADAFSPNTPQGACPECSGIGRVFEVTEKLLVPDDTKTIR
QRAIEAWPPAWQGKNLSRILTSLGYDIDTPWNKLSKKARDWILFTDETPTVPVYPDYTYE
QTQNAIKNNEDPSYMGTFSSAKRFVLQSFATTQSPRTKKRVSQFMQISQCPTCQGKKLKQ
ASLSVKFAGLDIGELSQLTLNELAKKLSNAANTKVNKNTKNPEQAIVTQRIASDILTRIE
ALTMLGLGYLSLERTTPTLSPGELQRLRLATQIRSKLFGVVYVLDEPSAGLHPADTQALL
KALDELIAAGNSVFVVEHDVSVVKHADWIVDVGPDAGVHGGDIIYSGPVEGLRKIKNSHT
GRHLFAKNASQESTQNSAQKKDQRQPKAWLKLANIERNNLKNLNAEFPLGVMTTVTGVSG
SGKSSLVSQALVELVYEALGQKVITQAPTDEADLLEQELQTHTSGKIIEGINNISRLITV
NQKAIGRTPRSNLATYTGLFDHVRKLFASTQKAKERRYDAGRFSFNVAKGRCKNCEGVGF
VSIELLFLPSVYSPCQVCHGKRYNEQTLEVTYRDKNISDILNLTVEAAHTFFENESAILR
ALDALMQVGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGNTLYILDEPTTGLHPSDI
SMLMSQLNKLVDAGNTVIMVEHDMQVARNSDWVIDVGPGAGEEGGLIVAQGKPTDVAQSK
ISRTAPFLNGAI
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcacacataaaaactcaacaacggatttatctgatcccagtaacagcattcaa
gtaagaggggcgcgcgttcacaacttaaaaaatgtagacgttgatttacctcgtaacgca
ttggttgtttttacaggaatatcgggctctggaaagtcgtcgcttgcgtttggaacgctg
tttgctgagtcgcagcaccgctatcttgattcggtatcgccgtacgctcgaaggttgata
gatcaagttgatgagcccgatgttgattctattgaagggctaccgcctgccgttgctttg
cagcagcaacgcggcgcaccgtcggttcgttcatccgttggcagcataacaactatttct
aacgcgctacgtatgctttactctcgtgctggcgattacccagctgggcagagtatttta
tatgccgatgcgttttcgccaaatacgccacaaggtgcgtgcccagaatgctcaggaata
ggccgagtatttgaagtaactgaaaagctacttgtgccagacgatacaaaaactattcgc
cagcgcgccattgaagcgtggccaccagcatggcaaggtaaaaacctaagccgtatactt
acctcgcttggttatgacatagacacaccttggaacaaactttctaaaaaagcacgggat
tggattttatttaccgacgaaacacctactgtgccggtatacccagattacacctatgag
caaacacaaaatgcgataaaaaataacgaagatccaagctacatgggaactttttcaagc
gctaaacgctttgttttacagtcttttgctactacccaaagcccgcgtacaaaaaagcgc
gtatcgcagtttatgcaaatatcgcagtgccctacttgccaaggtaaaaaattaaaacaa
gcatcgttaagtgttaaatttgcagggctcgatattggcgagctatctcaacttacatta
aacgagcttgctaaaaaactaagtaacgccgccaataccaaagtaaataaaaatacaaaa
aatccagagcaagctattgttacgcagcgcattgccagcgatattctcacccgtattgaa
gcactaaccatgcttggtttagggtacttgtcgcttgagcgcacaacgccaacgctctca
cctggtgagttacaacgattgcgacttgccacacaaattcgctctaaattatttggggta
gtttatgtattagatgaaccatcagcgggtttacaccctgccgatactcaagcactttta
aaagcgctcgacgagttaatagcggctggcaattctgtatttgttgttgaacacgatgtt
agtgttgttaagcatgccgattggattgttgatgtaggccctgatgcaggagtgcatggt
ggcgacattatttacagcggccctgttgaagggttaagaaaaataaaaaattcgcacacc
ggtcgccacctttttgctaaaaacgccagtcaagagtctactcaaaacagcgcacaaaaa
aaggatcaaaggcagcctaaagcgtggctaaagttggctaatattgagcgcaataatctt
aaaaatctcaatgcagaatttccattaggtgttatgacaaccgttactggggtttcggga
tctggtaaatcaagcctagtaagccaagccttagtagagcttgtttacgaagcacttggg
caaaaagtaataacacaagcgccaaccgacgaagccgacttactcgaacaagaactgcaa
acacacaccagcggaaaaatcattgaaggtataaataatataagccgcctgattaccgta
aatcaaaaagcgattggccgtacccctcgttcaaacttagctacctatacgggtttgttt
gatcatgtgcgtaaactatttgcttcaacccaaaaagcaaaagagcgccgttacgatgcc
ggtcgtttttcgtttaatgttgctaaaggtcgctgtaaaaactgtgaaggcgttggcttt
gtgagtatagagctactgtttttacctagcgtttattcaccttgccaagtgtgtcatggc
aaacgttataacgagcaaacacttgaggttacatatcgtgataaaaacataagcgatatc
ctcaatttaacggttgaagcggcgcataccttttttgaaaatgagtctgcaatactgcga
gcactcgatgcacttatgcaagtaggtcttgggtatttacgtttagggcaacctgccact
gagctttctggcggtgaagcgcagcgtattaaattagccaccgagctgcaacgtgcccag
cgcggcaacacgctttatattcttgatgagccaaccacaggcctgcatccatcggatata
tcaatgctaatgtcgcagttaaataaattagttgatgcaggcaataccgttattatggtt
gaacacgatatgcaagtagcccgaaatagtgactgggttattgatgtaggccctggtgct
ggtgaagaaggcggcttaattgtagcgcaaggtaaacctacagatgtagctcaatctaaa
ataagccgaacagcaccttttttgaatggcgcaatttaa
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