Pseudoalteromonas sp. Bsw20308: D172_019385
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Entry
D172_019385 CDS
T04175
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Pathway
pbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D172_019385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbw03019
]
D172_019385
Enzymes [BR:
pbw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D172_019385
Messenger RNA biogenesis [BR:
pbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D172_019385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
Cas3-like_C_2
AAA_19
Flavi_DEAD
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ALQ10240
LinkDB
All DBs
Position
pPBSW1:485757..487061
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AA seq
434 aa
AA seq
DB search
MNFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPII
QKLVESELSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANAL
KEGVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEERQ
ILLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERRKQELLSELIGK
KNWQQVLVFVNMKETADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVLVAT
EVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGRQGQAISFVSREEENTLFEIET
LIGQKIKRVYLEGYEVSNREVLIDKIAKKPAHLRRTRSNKLSGQATGEARAVNRSRISSV
RKSLKGEKLSLKKS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaatcttttagtttcgctcctgaaatcatccaggcgttggacgaacttaac
tatcacactcttacgcccattcagcgcgcagcaatccctgctgttcgtaaaggtaaagac
gttttagccagtgcacaaactggtaccggcaaaactgccgcgtttgctttacctattatc
caaaaattggttgagtctgaactcagcacaacgaatgcacctcatgcattagtacttgcg
ccaacgcgtgaacttgcagaacaaattgcaaataacttcagagattttgcaaagcatact
tcgcttaaagtcgttagtttatttggtggtgtgagtaccgccggccaagcaaacgcttta
aaagaaggtgtggatattgttgttgctacaccaggtcgtttatttgatcatattcgttta
ggtaacttaagccttgcaagcgttaagcaccttgttcttgatgaagctgaccgtatgctt
gatatgggctttattgaagatatgcaaaacgttattaaaagctgtgcagaagagcgccag
attttacttttctcagctacattccctgcagcgattaaacagtttgcatctaaggtatta
aaacaagctgaaatagtacgtgttgatcaaactaacagtacagcaagcactgttgagcat
gttgtttaccctgttgaagaacgtcgtaagcaagagctactttctgaattgattggtaag
aaaaactggcaacaagtgcttgtatttgtaaacatgaaagaaacggctgacgagcttgta
aaagagcttaaccttgatggtattccggcgggcgtttgccacggtgacaaatctcaaggt
aaccgtcgtcgtgcacttcgtgaatttaaagaaggtaaagtgcgcgtattagtggctaca
gaagtggctgctcgcggtatagatattgatggtttacctcgtgtaattaatattgattta
ccatggcttgcagaagattacgttcaccgtattggccgtacaggtcgtgctggtagacaa
ggtcaagcaatctcatttgttagccgcgaagaagaaaacaccttgtttgaaattgaaacg
ctaattggccaaaaaatcaaacgtgtatatttagaaggttacgaagtaagtaatcgtgaa
gtactaattgataaaattgctaaaaagccagcgcatttacgccgtacacgttctaacaag
ttatcaggacaagcaaccggtgaagcgagagcagttaatcgctcacgtatttcaagcgtt
cgtaaaagcttaaaaggcgaaaaactgtcacttaaaaagtcatag
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