Pseudoalteromonas sp. Bsw20308: D172_019660
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Entry
D172_019660 CDS
T04175
Name
(GenBank) DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbw03032
]
D172_019660
03036 Chromosome and associated proteins [BR:
pbw03036
]
D172_019660
03400 DNA repair and recombination proteins [BR:
pbw03400
]
D172_019660
DNA replication proteins [BR:
pbw03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
D172_019660
Chromosome and associated proteins [BR:
pbw03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
D172_019660
DNA repair and recombination proteins [BR:
pbw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
D172_019660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-CCDC81_euk_2
Arteri_nsp7a
UBA_HYPK
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
ALQ10289
LinkDB
All DBs
Position
pPBSW1:553374..553649
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AA seq
91 aa
AA seq
DB search
MNKAQLVEKIATDAEISKAAATRALDAFTGAVTSSLKEGDSVALVGFGTFSVKERAARTG
RNPQTGAEIQIAAATIPSFKAGKGLKDQVNP
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagctcaattagttgaaaaaattgctactgatgcagaaatctctaaagctgcc
gctactcgtgctcttgacgcgtttaccggtgctgtaacttcttctttaaaagaaggtgat
tcagtagcgttagttggttttggtactttctcagtaaaagaacgtgcggcacgtactggt
cgtaacccgcaaacgggtgctgagatccaaatcgcagcagcaactatcccaagctttaaa
gcaggtaaaggtcttaaagaccaagtaaacccttaa
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