Pseudoalteromonas sp. Bsw20308: D172_019855
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Entry
D172_019855 CDS
T04175
Name
(GenBank) RNase D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pbw03016
]
D172_019855
Enzymes [BR:
pbw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
D172_019855
Transfer RNA biogenesis [BR:
pbw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
D172_019855
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
IL28A
Motif
Other DBs
NCBI-ProteinID:
ALQ10325
LinkDB
All DBs
Position
pPBSW1:603876..605006
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AA seq
376 aa
AA seq
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MQYQLIETQNQLNTFVEQIKNKPILAIDTEFMRRRTLYPEVALIQVFDGEHLALIDPLAE
LSLFDFWQILKDPTVLKVLHSPSEDIEVFQKYAGFVPAPLFDTQFALQLLGEGNCMGFAL
MVKELLGIEIDKSESRTNWLQRPLTTKQLDYAAADTFHLLPCFKLIIERIKAADLFDIVI
NESELIANKRAFQTPDELLYKDIKNAWQLKPHELAVLKELAVWRRNKAIRKNLALNFVLK
EHNMTEIAKRGPSSLNALRQIPGVEAIEVNRSGVEVLKCIEAAKAIPESEHPEVLKRLID
FPTYKKVAKDIKQKITKVAKEHNIPEDVMASKKQINQLISWNWKLTNEQKRSHIKPDLLS
SWRYSYVQDALKEWDT
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
gtgcaatatcaattaatcgaaacacaaaatcaactgaacacttttgttgaacaaataaaa
aacaagcctattttagctattgataccgagtttatgcgtcgtcgcactttgtatccagaa
gttgcacttatccaagtatttgatggcgagcatttagctttgattgatccactggctgaa
ctttctttgtttgatttttggcaaatattaaaagaccccaccgtactaaaagtattacat
tcaccttcagaggatattgaagtatttcaaaaatacgcaggctttgtccctgcgccgtta
tttgatacacaatttgcactgcaattgctaggtgaaggcaactgtatgggttttgcgctt
atggtaaaagagctgctgggtattgaaatagataaaagtgaatcgcgtactaattggttg
caacgtccgttaacgactaaacaacttgattatgcagcagctgacacatttcatttgctg
ccgtgttttaaattaattattgaacgtattaaagcagctgatttatttgatattgttatt
aatgaaagcgaattaattgctaataaacgtgcgtttcaaacacccgatgagcttttatat
aaagatattaaaaatgcatggcaacttaaaccacatgagctggctgtattaaaagagctt
gctgtatggcgacgaaataaagcaattagaaaaaatttagcgcttaattttgttttaaaa
gaacataacatgactgaaattgcaaaacgtggcccttctagtctaaatgctcttcgtcaa
attcctggtgttgaagctatagaagttaatcgttctggtgttgaggtactaaaatgtatt
gaagcagctaaagcaatacctgagagcgagcaccccgaagtacttaagcgcttaattgat
tttcctacttacaaaaaagttgctaaagatataaagcaaaaaatcaccaaagtagctaaa
gagcacaatataccagaagacgttatggcttctaaaaagcaaattaatcaattgatcagt
tggaattggaagcttactaatgagcaaaaaaggagtcatataaagcctgacttacttagc
tcttggcgttattcatatgttcaagatgcgctaaaagagtgggatacttaa
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