Pieris brassicae (large cabbage white): 123706895
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Entry
123706895 CDS
T08632
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pbx
Pieris brassicae (large cabbage white)
Pathway
pbx03013
Nucleocytoplasmic transport
pbx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pbx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123706895
03015 mRNA surveillance pathway
123706895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbx03019
]
123706895
Enzymes [BR:
pbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123706895
5.6.2.5 RNA 5'-3' helicase
123706895
Messenger RNA biogenesis [BR:
pbx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123706895
mRNA cycle factors
Common to processing body (P body) and stress granule
123706895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
AAA_16
AAA_22
SRP54
nSTAND3
nSTAND_NTPase5
UvrD_C_2
AAA_5
DUF7953
Motif
Other DBs
NCBI-GeneID:
123706895
NCBI-ProteinID:
XP_045512439
LinkDB
All DBs
Position
3:complement(13798517..13805326)
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AA seq
1037 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLPSANQ
VNGLGRSDISSKLASVTNAIAELQFEEDDEALYSSKELPDHACKYCGIHDPSTVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDESSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARVLGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSIYDRARPLRDPLAYVGPERAAMLHAPVPPAAFSA
HRGLQRPPMNMNQRSRKRPPRLSQEPLSQQAPLSLSQGASQPDFSQESLAPDCPSQPDGL
LSQDSTYQGGFRARSQY
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgatgcgtatggacctagctctcaaacgctcacgtttttggatactgaagaa
acggatcttattggcgccgatactcaagggtctgaattcgagtttacagattttacttta
ccatcccaaagtcaaacgcaggcatctcaacatgaccatggtctgccctctgccaatcag
gttaatggcttggggagatcggacattagttcaaaattggcaagtgtaaccaatgcaatt
gctgaattgcaatttgaggaagatgatgaagctttgtatagtagcaaggaattgcctgat
catgcttgcaaatactgtgggatacatgacccatctactgtggttatgtgcaacatttgc
aacaaatggttttgcaatggccgtggaaatacatctggatcccatataattaatcatctg
gtaagagctaagcataaggaagcagcattgcaccgtgatggacctcttggagaaacccta
cttgagtgttactcttgtggagcacggaatgtctttgttttaggatttatccctgctaaa
gccgattcagttgttgttttactatgcaggcaaccatgtgcagctcaaagctccttgaaa
gacatgaactgggatcaagaacagtggaagcctttaatttcggatcgagcatttctatca
tggctagtcaaggtaccatctgaagcagaacagatgagggcacgtcaggtaacacctcaa
caaatagggcgcttagaagaactttggcgcgacaatgtggatgcaacgttccaggacttg
gagaaacctggtgtagatgaggagccacatcaagtattgttaagatatgaagatggatac
caataccaaaatatttttggcccattggttaaacttgaggcggattacgacaagcggctc
aaggaatcgcagacccaagaaggtattgaagtccgttgggatgtgggactaaataaaaag
accattgcctacttcactctggcaaaaactgacagtgacatgaaacttatgcatggagat
gagttaagattaagatatgtaggcgagttgcacaaggcttggtccggcgtgggtcacgtg
atcaaggtgcctgataactacggcgatgacgttggtctagaactaaagagcggcgccggc
gcaccactggattgcacttccaactttgtcgtagacttcatttggaagagtacttctttt
gatcgaatgcaactagcactgcggaaattcgcggtcgacgaatcatcggtctcgggatac
atctacagacgacttttgggacatgaggtggaagaagtattgttcagagtgcatctccct
aaacacttcagcgcgccgaacttgcctgatcttaaccgatctcaggtatatgctgttaag
cacgccttgcaacgtccactttccttgatccaaggtccacctggaactggaaaaactgtg
acttcagccactattgtttatcaacttgtgaggcagaacggtggaccggtacttgtctgc
gcaccttcaaacactgcggtagaccaactaactgagaaaattcatagaactggactcaaa
gtagttaggctctgcgccaagtcccgtgaagctatggagtcatccgtttcttttctggcc
ctacacgaacaggctagagttttagggtcagctgatagtgagcttcgcaagcttacaaga
ttgaaggaggaagctggtgaattatccgcagctgatgaacgcagataccgtgccttacgt
cgggccgctgaaagaagactcttggatgctgctgacgttgtctgcaccacttgtgtcgga
gctggagatcctagggtggcgagaatgcgtttccagtccattcttattgatgaaggcatg
cagtccactgagccagagtgtatggtaccagttgtgctcggagctagacagctgatcctc
gtcggagatcattgccagttaggcccagttgtgatgtgcaagaaagcggccaaggcagga
ctaagccagagcttgttcgagcgtctcgttgttctcggcatcagaccattccgcctcgaa
gttcaataccgtatgcacccggaactatcgcgattcccgtcagatttcttctatgaaggt
tccttgcaaaatggagtaagcgcagaagaaagacgcctacacaaaatcgatttcccgtgg
ccgagaccagatagacccatgttcttttatgtgactcaaggacaggaagaaatcgctggg
tcgggaacatcttatctgaatcgtaccgaggccgccaatgtggagaaacttacaacccgc
tttttaaaggctggtgtgagaccagaacagatcggtatcatcacgccatatgagggacaa
agatcttacctggtacagcacatgcagtaccaaggaagcttacacgcgaagctttaccaa
gagattgaagtggcaagcgtggacgcgttccaaggccgagagaaggacatcattataatg
tcgtgcgtccgctccaatgaacatcagggaattggatttttaagcgatccgcgccgttta
aacgtcgccttgactcgagccaagtacggtttgattgttgtcggcaatcctaaagtttta
agcaagcagccactatggaatcatctcctggcattttacaaagaacgtcgcgtgctaacc
gaaggaccgctgtcgaacctaaaagagtccgcaatacagttcgccaagccgaaaaaacta
gtgaacgctcagaatcccgggtcgcactttatgtcgacgtccatgtttgacgcccgcgag
gctatggtgccggggtctatctacgacagagcgagaccgttgagagatccgttggcgtac
gtcgggccagagcgggcggcgatgttgcacgcgcccgtgccgccggccgctttctccgcc
catcgaggtctccaacgcccgcccatgaacatgaaccaacggagcaggaagcgtccgccc
cggttatcgcaggagccgttgtcccagcaagcgccgctgtctctgtcccagggagcgtcc
cagccggacttcagtcaggaatccctcgcgccggactgtccgtcccaaccggacggcctc
ctgtcccaggactccacataccagggcgggttccgcgcgcgaagccagtactga
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