Pieris brassicae (large cabbage white): 123707197
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Entry
123707197 CDS
T08632
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pbx
Pieris brassicae (large cabbage white)
Pathway
pbx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123707197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbx03019
]
123707197
03041 Spliceosome [BR:
pbx03041
]
123707197
Messenger RNA biogenesis [BR:
pbx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123707197
Spliceosome [BR:
pbx03041
]
Complex B
Other components
Prp19-related factors
123707197
Complex C
123707197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
NRDE-2
DHR-2_Lobe_A
PPR
ARM_TT21
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
123707197
NCBI-ProteinID:
XP_045513008
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All DBs
Position
3:3713381..3716830
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AA seq
842 aa
AA seq
DB search
MPILDGKEIEIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKGAPKHEINLIYERALKEL
PGSFKLWYNYLKIRRSQIRGKCIIDPSYEDVNNCFERSLVFMHKMPRIWMDYCTFLTDQY
KITMTRKAFDSALRALPITQHHRIWPLYLGFLKKHDIPETAVRVFRRYLKLCPEDTEEYI
DYLISIDKLDEAAIKLAQIVNNENFQSKHGKSNHQLWNELCELISKNPDKIHTLNVDAII
RGGLRRYTDQLGHLWNSIADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKNTNPSEDEDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLHTLWVGFAKFYETNDQIEDARLIFEKATQ
VIYVKVDDLASVWCEWAEMEIRHENYEEALKLMQRATVLPSRKVAYHDENETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPPEFAKSIFLLYAKLE
EEHGLARHAMSVYERATTAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLAEGN
SREMCVRFAEMETRLGEIDRARAIYAHCSQMCDPRITADFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTISDLAPGMKDGMRMLEAKAAEMAVQSKG
NIMFVRGETQGLKDSSDKVVNPDEIDIDEASENSEEEDESEIAPVEKKEIPAAVFGGLLP
EN
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgcctatattagatggaaaagaaattgaaatcttctttagtgaagaagacctgccatac
gaggaagaaattttgagaaaccctttttctgttaaacattggctgcgatatattgaacat
aagaaaggagctcccaagcatgaaataaatcttatttatgagcgagctcttaaagaatta
ccagggtcctttaaattgtggtataactatctcaagataagaaggtcccaaataagggga
aaatgcataatagatccatcatatgaagatgttaacaattgttttgaaagatcattggtc
tttatgcataaaatgcctaggatatggatggactactgtacatttttaacagaccagtat
aaaataacaatgacaagaaaagcctttgatagtgcattaagagcattaccaataactcag
catcatagaatttggcctctgtacttgggttttttaaagaaacatgatataccagaaact
gctgtgcgtgtttttagaagatacttaaagctctgtccagaagatactgaagaatacatt
gattatttgatatcaatagataaattagatgaagcagctattaaacttgctcaaattgtt
aataatgaaaactttcagtcaaaacatggtaaatctaatcatcagctatggaatgaatta
tgtgaattgatatctaaaaatcctgataaaatacatacactaaatgtagatgctattata
agagggggtctgcgacgctatacggaccagttaggacatttatggaattctatagctgac
tactatgtaagaagtggtctctttgaaagagcaagggatatttatgaggaagctattcaa
acggtaactacagtccgtgactttacacaagtttttgatgcttatgctcaatttgaggaa
cttagtcttagtaagaaaatggaagaggttgctaaaaatacaaatcctagtgaagatgaa
gatatagacttagaacttaggctggcaagatttgaatatttgatggaaagaagattgcta
ttacttaattcagttttgttaagacaaaatccacataatgttgcagaatggcataaaaga
gtaaagttgtatgaaggaaaacctcatgaaattattgacacatacacagaagctgttcaa
actgttgaccctaaattagctgttggaaagttgcatacattgtgggtaggttttgcaaaa
ttctatgaaactaatgatcaaatagaagatgcaagattaatttttgaaaaagcaacacaa
gtaatctatgtaaaagttgatgatcttgcttctgtatggtgtgaatgggcagaaatggag
ataagacatgagaactatgaagaagctcttaaattaatgcaaagagcaactgtgctgcct
agtagaaaagttgcctaccatgatgaaaatgaaacagttcaaatgcgtctatataaatct
cttaaagtatggtccatgtatgcagatttagaagaaagctttggcacatacaagtcctgc
aaggctgtctatgatcacatcattgatttaaaaatagcaacaccacagattattataaac
tatggcttgtttctagaagaacataactactttgaagaggccttcagagcttatgaaaaa
ggaattgcactttttaaatggcctaatgtgtatgacatatggaatacatatttaactaag
tttttaaagagatatggaggaagtaagcttgaaagagctagagatctgtttgaacaatgt
ttagaacattgtcctcctgaatttgcaaaatccatatttttattatatgcaaagttagaa
gaagaacacgggttagcaagacatgctatgtcagtatatgagcgtgctacaactgctgtc
ctaccagagcagatgtttgaaatgtttaacatctatataaagaaagctgctgaaatatat
ggtgttccaaaaacacgccaaatatatgaaaaagccatagaaacattagctgaaggaaac
tcaagagaaatgtgcgtacgctttgcagaaatggaaacccgtcttggagaaatagataga
gctagagcaatctatgcccactgtagtcaaatgtgtgatcctaggattacagcagacttc
tggaacacttggaaagagtttgaagttagacatggtaatgaagatactatgcgtgaaatg
ttaagaataaagagaagtgtgcaagccacatataatacacaggtcaatatgatgtctgca
caaatgctaagttctgcagcacaagcggcaggcactatatctgatttagcaccaggaatg
aaagatggtatgagaatgttagaagctaaagcagcggaaatggcagttcaaagtaaagga
aatattatgtttgttagaggagaaacccaaggccttaaggatagttccgataaagttgtg
aaccctgatgaaattgacattgacgaggcatcagaaaacagtgaagaggaagatgaaagt
gaaatagcaccagttgaaaagaaagaaattccagctgccgtttttggtggtttgttgcca
gaaaactaa
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