Pieris brassicae (large cabbage white): 123709285
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Entry
123709285 CDS
T08632
Name
(RefSeq) transcription elongation factor SPT6 isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
pbx
Pieris brassicae (large cabbage white)
Brite
KEGG Orthology (KO) [BR:
pbx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbx03021
]
123709285
03036 Chromosome and associated proteins [BR:
pbx03036
]
123709285
Transcription machinery [BR:
pbx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
123709285
Chromosome and associated proteins [BR:
pbx03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
123709285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
S1
HHH_3
SH2
Spt6_S1
HHH_9
Tex_N
S1_RRP5
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
123709285
NCBI-ProteinID:
XP_045516441
LinkDB
All DBs
Position
5:9196087..9216571
Genome browser
AA seq
1710 aa
AA seq
DB search
MADFLESEAEESELDSEDEKPAERKKPKRKAAVQSDDEDEEEDDDEERLREELKDLIDDA
PIEESGSDGEDSDASVGPKKRKKSDDELDDRLEDEDYDLIEENLGVKVARNKFKRLRRLE
DDDSDNEGNDDPDLEREVIAEKLFVAGSDEEEENRSEPGAAREMEYDDDNEDMESDADDF
IVDDDGRPIAERKKKRKPIFTDASLQEGQDIFGVDFDYDEFEKYGDEDYDEEDEEDLDEY
IEDEEEDGERRRTKKGKAKRPSKKSIFEIYEPSELKRSHFTDLDNEIRKTDVPERMQIRE
VPITAVEEGSTELEDEAEWIYKQAFLKPPVSKADSQEARERSRRGPSTVVKIRQALDFMR
NQTLEVPFIAFYRKEYVQPELSINDLWKVYKYDAKWCQLKQRKENLLKLLENMREFQMDK
VMMNPDAPIPDAMRLIKDEDIERLKNVQTPEELRDVHTHFLLYYSHDLPEMQKVQRGKER
KSEIEEKKKYAREEAEKNGEDPDEAAAAIEAALPDDEETTEVKYAVRSGPYELCRKAGLE
PLVRKFGLSAEQFAENVRDNYQRHEVEQPSVPPLEAAQDYVPGIQTPTGGSSGEVLRRAV
YMCGVQLAREPLLRSTLRDTLRERATITVKPTTKGLKMIDESHSCFGLKYLNKKPVRDLT
GDQFLKLTMAAEDKLLDLNISENLEGNTGPSYLEELKQLYQKDEFAATVQAWNDIRIEAV
TLALTKIVMPELRRELQALLLQESKEYVLKCCRRRLYDWLKVAPYESRVSDDDDEEWDAS
NGVRIVSIAYVPDRAHCAFACSLVGGGEVADHLRLPHLLYRRNAWDPLERQNKEADLTAL
RRFILRKKPHVIVIGGESREALNIKADVSECIQQLIEDEQFPRIPIEIADNHISKIYSNS
IRGRNDFREYPDVLRQAICQARLLQDPLMEISQLCGPDEEILCLRYHPLQDQITKEDLLE
GIELEFVNRVNEVGVDVNEAVLTGRGTELLQFVCGLGPRKAQALIKLFKQTNQKLENRTQ
LVTVCHMGPKVFINCSGFIKIDTSSLGDSTEAYIEVLDGSRVHPETYEWARKMAVDALEY
EDEDANPAGALEEILEAPERLKDLDLDAFAEELERQGFGNKSITLYDIRAELNSRYKDLR
VSYRSTTPEEMFDILTKESPETFFVGKMVLASVVGITHRKPQREMLDQANPVRNDETGLW
ECPFCHKNDFPELSEVWNHFDAGACPGQATGVRIRLDNGLSGYIHIKNLSDRHVTDPTER
VRIGQTIHCRVLKIDVERFSVDCSSKSSDLLDKNNEWRPTKDPYYDQETEEKDLRKDKEA
KQTKERMQYVKRVIVHPSFRNISFAEAEKLMEKMAQGEVIVRPSSKGSDHLTVTWKVAEG
ICQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARYVTPMAGHARDLIAYKYYKPLG
GMRDKAEELLKEEKSKNANKIHYVVSAAKNHPGRFLLSYLPRNKCTHEYVSVTPDGYKFR
QRMFDSLGSLLKWFKEHFRDPPPSGTPAQRTPALRTPHGGMTSTMYHTPAAHTPAFHTPA
HTPGPAYINTPYTPSAQTPYMTPFATTPRQPDFLTPVIPRHKQLPVFTEPSDWQKAAEDW
VRHRTVRDTPATPRSSEGMSTPRQSRTPRMDSRSTPRHDMRSTPRHDARSTPHGHSGRSS
RAHSVRSTPHTNTSPRSMSLGDATPLYDEN
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atggcagactttctcgagtccgaagccgaagaaagcgagttggattctgaagatgagaag
cccgcagaaagaaagaaaccaaaacgtaaagctgctgtacaaagtgacgacgaagatgaa
gaagaggatgatgatgaggaacggcttcgagaagaattaaaagatcttatagatgatgca
ccaatagaagagtctgggagtgatggagaagattcagatgcaagtgtgggacctaaaaaa
agaaaaaaaagtgatgatgaattagatgataggcttgaagatgaagattatgatttgatt
gaggagaatcttggtgtcaaagttgccaggaataaatttaaacgtctgaggcggttggaa
gatgatgatagtgacaatgaaggaaatgatgatcctgatttagaaagagaagtaattgct
gagaagctgtttgttgcaggatcagatgaggaagaagaaaatcgttcagaaccaggtgct
gcaagggaaatggaatatgatgatgacaatgaggacatggaatcagatgctgacgacttc
attgttgatgatgatggaagaccaattgcagagagaaagaaaaaacgcaagcctatattc
acagatgcttctcttcaagagggccaagatatatttggggtggactttgactatgatgaa
tttgagaagtatggagacgaagactatgatgaagaagatgaagaggatttggatgaatat
atagaagacgaggaagaggatggtgaaagacgtagaactaaaaaaggtaaagctaagcgg
ccaagcaagaagtctatatttgaaatctatgagcctagtgagttaaagagaagtcacttc
actgatttggataatgagatacgtaaaacagacgtaccggagcgaatgcaaatacgcgaa
gtgcccatcacggccgtggaagaaggtagtactgagttagaggacgaggctgaatggatt
tacaaacaggctttcttgaaaccgcctgtgtccaaggctgattctcaagaggctagggag
agatcaagacgtggcccaagcacagtggtgaaaattcgtcaggctttggactttatgagg
aatcaaacgttggaagtcccgttcatagccttctatagaaaggagtatgtgcagcccgaa
ttgagtattaacgatctatggaaagtgtataaatatgatgccaagtggtgtcaattaaag
caacgtaaagaaaatctattgaaactgttggagaatatgcgcgaattccaaatggataaa
gtgatgatgaaccccgacgcgcctattccagacgctatgagactaatcaaggatgaagat
attgaaaggttaaaaaacgtgcaaacacccgaagaattgcgcgatgttcacacacatttc
ctgttgtactactcacatgacctacctgaaatgcagaaagtgcaacgcggcaaagaaagg
aagtcggagattgaagagaaaaagaaatatgcccgtgaagaagcagaaaagaacggtgaa
gacccagacgaggcagcagcggcgatagaagctgcgttgcctgacgatgaagagaccact
gaggtgaagtatgcggttcgatcggggccttacgaactatgcagaaaggctggacttgaa
cctctggtacgcaagttcggtctgtcagccgaacaattcgctgagaacgtgcgtgataac
tatcagagacacgaggtcgaacaaccctctgttccgcctttggaggctgcccaagactat
gtaccaggtattcagaccccaacgggcggatcttcaggtgaagtgttacgtcgtgctgtg
tacatgtgcggggtccaattggcccgtgagcccctacttcgctctactctgagggacacg
ttgcgggaaagggccactattaccgttaaacccactaccaaggggctgaagatgattgat
gagagtcactcctgttttggtttaaaatacctgaataagaaacctgttcgcgatttgact
ggagatcagtttctgaaactgaccatggctgcggaagacaagttgctggatctcaacatc
agcgagaatcttgaaggcaacactggccccagttatttggaagagttgaagcagttatat
cagaaggatgagtttgcggcaacagttcaagcctggaacgatattcgaatcgaagcagtc
acattggctttgactaaaatcgttatgcctgaattgagacgggagttgcaagctcttctc
ttgcaggaatctaaggaatatgtactaaaatgttgcagacgacgtttatatgattggctc
aaagtggctccttacgaatcccgagtctctgatgatgatgacgaagaatgggatgcgtct
aatggtgtacgtattgtatcgatagcgtacgtaccagaccgggcgcactgtgcgttcgcg
tgttcgttagtgggaggaggcgaagtcgccgatcatttacgattaccgcatttgttgtat
cgccgtaacgcttgggatcctcttgagaggcaaaacaaagaggccgaccttaccgcactt
agaaggttcattctccgcaaaaagcctcacgtgatagtgatagggggtgagtcacgagag
gctctcaatattaaggcggacgtgtctgagtgcattcaacagttgattgaggatgagcag
tttcccaggatacctatagagatagcagataaccatatcagcaagatttacagtaatagt
atacgaggaaggaatgacttcagggaatatcccgacgtactgagacaagcgatatgccaa
gcccgattattacaagacccacttatggagatttcacagctttgtggacctgatgaggaa
atactgtgccttcggtaccatcccctacaagaccagatcaccaaagaggaccttcttgaa
ggaattgaactagaattcgtcaacagagtcaacgaagtcggcgttgacgtcaatgaagcc
gtattaacgggacgagggacggaactcctccaatttgtgtgcggtttgggaccaagaaag
gctcaggccctgatcaaactcttcaaacagaccaatcaaaagctagaaaatcgtacgcaa
ttggtcacagtgtgtcacatggggccgaaagtgtttatcaactgttcgggattcatcaaa
attgacacaagtagccttggagatagtacagaggcgtatatagaagttctggacgggtca
agagtgcatccggaaacatatgagtgggcaaggaagatggcagttgatgccctcgaatat
gaagacgaagacgccaatcctgcgggagccctggaagagatcctggaggccccagagagg
ttgaaagatctggatctagatgcgtttgccgaggagttggaaagacagggcttcggtaat
aagagtatcacgctgtatgacatccgagcggagttaaattctaggtacaaagatctcaga
gtttcatacagatcgacgactcctgaagagatgttcgatatcctaaccaaagaatcgcca
gaaacattttttgttggaaagatggtattagccagtgtcgtcggaatcactcacagaaag
ccacaaagggagatgttggatcaggccaatcctgtgaggaatgacgagacaggcctttgg
gaatgtcccttctgtcataagaatgactttcctgagctctctgaggtatggaatcacttc
gatgcgggcgcgtgtccgggtcaagcgacgggtgtacgtattcgtctcgataacggactt
tccggatacattcatatcaagaacttatcggaccgacacgtaacagatccgacggaacgc
gtacgaatcggacagacgatacattgtcgagtgcttaagatagatgtcgaacgattctcg
gtcgattgctcttctaagtcgtctgatttgctcgataaaaataacgagtggagaccaacg
aaagatccctattacgatcaagaaacagaagagaaagacttgcgaaaggataaagaggcg
aaacaaactaaggagcgaatgcaatacgtgaaaagagttatagtgcacccatcatttaga
aatatatctttcgccgaagcagaaaaacttatggagaaaatggcacaaggagaagttatt
gtgagacccagtagtaagggatctgatcatctcacggtgacctggaaggtggcagaaggt
atttgccaacacattgatgtgcgagaggaaggcaaagaaaatgcgttttcgttaggtcgc
agtctctggatacagggttcagaatttgaagacttagatgaaattatagctagatatgta
actccaatggccggtcacgcgcgagatctcattgcctacaaatattacaaacctttaggc
ggcatgcgagacaaagccgaagagttgctcaaagaagagaaatctaaaaacgcaaataaa
attcactacgtggtgtcggcagctaagaatcatcccggcagattccttctatcttacctg
ccgcgaaataaatgtacgcacgagtacgtatcggtgacgccagatggatacaaattcaga
cagagaatgtttgattcgctaggaagtctcttaaaatggttcaaagaacacttcagagat
ccacccccaagtggaactccagcgcagaggacgccagctctgcgaacaccacacggcggg
atgacatctacaatgtatcacacaccggccgctcacacgccggccttccacactccagcg
cacacacccggcccggcatacataaacacaccttacaccccatcagctcaaacaccctac
atgacaccgttcgccaccactcccaggcagccagacttcctaacgccagtcataccgcga
cacaagcagcttccagtatttacggagccgtcggactggcaaaaggccgccgaagactgg
gttagacatcgaaccgttagagacacccctgcaacccctcgtagcagcgaaggaatgtcg
actccgcgacaatctcgcacgcccagaatggactcgagatccaccccccgacatgacatg
agatctacacccagacatgacgccagaagtaccccccacggccactctggaaggtcgtcc
agggcacactcagtgcgttctaccccccacacgaatacgtcacccaggtcgatgtcactc
ggcgacgcaacaccgctctatgacgagaactag
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integrated database retrieval system
