Pieris brassicae (large cabbage white): 123710439
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Entry
123710439 CDS
T08632
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06823
collagen type XVIII alpha
Organism
pbx
Pieris brassicae (large cabbage white)
Brite
KEGG Orthology (KO) [BR:
pbx00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pbx04147
]
123710439
00535 Proteoglycans [BR:
pbx00535
]
123710439
00536 Glycosaminoglycan binding proteins [BR:
pbx00536
]
123710439
Exosome [BR:
pbx04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
123710439
Proteoglycans [BR:
pbx00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
123710439
Glycosaminoglycan binding proteins [BR:
pbx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123710439
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF6789
Motif
Other DBs
NCBI-GeneID:
123710439
NCBI-ProteinID:
XP_045518265
LinkDB
All DBs
Position
5:3242940..3290640
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AA seq
912 aa
AA seq
DB search
MAMVISQTTKAAIGGFLALMILGAVLVVGAAFGWFDPKREDEDTPAKISARLQGRTSYVT
HRAVNPDENRLPIVSHSSPFVHKGQKGDRLAEDGDLGPSGAGKPERPNTNISSQCKCSIN
DISVMLTNIPSMRGPPGPQGPTGADGTTGAPGKTGQMGEQGPPGPAGPKGDRGDRGESGM
PGVEGQQGAKGEPGSDGTPGLQGPSGPPGPPGSITPTLMESTGLYGADRILGPPGDRGPM
GLAGPPGERGYTGNKGEKGLHGSKGDKGERGYTGARGPHGAKGERGQPSKDGLPGLPGSH
GRPAEKGEKGVRGLPGPPGPSLTAVSENSVLGDLARTGPRDIAKLKGDKGERGEKGEKGM
RGIEGPQGFPGNDGKAGDRGDIGPSGLPGTQGASGLTGPKGDKGDSGPPGPVAISREEAV
IMTKGDKGEPGPRGKRGHPGAPGPRGAPGLPGPPGIPGTNGVSGDIGLPGWTGPPGIAGP
SGTQGPKGEKGDPGIALADLEKLKGDKGERGIDGTPGAAGKDGPRGPPGPPGTSSNVQYI
PVPGPPGPPGPPGTSNTNELPLDTLTDSPGINRLETTAGKPRDALQILRNLNNLMQYRQG
AYHFAEPLDSLSESGDYDDEEDGRTIIGTVLFKTTDSLLRLGAKNPRGTLAYVIQEQALL
IRVNNGWQYVSMGSLLAVHNSPGNGPTRTPLQNILETSSLVHHKSPVGEGPVLRLAALNE
PHTGDMHGVSSTNYECHRQAQRAGLDGTFRAFISSRVQNIDSIVSWVDREIPVVNIRGDV
LFNSWGEMFDGSGALFAHAPRIYSFSGKNVLTDPGWTQKAVWHGASPNGEPAMDAYCDAW
HSSNPEKFGLASSLRSNKLLDQETYSCSSRLIVLCIEATPVDTARRKKRSKYRTDKLHFL
KDIEQRNETRII
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggtgatatctcagactactaaggcggcaattggaggatttttagctttgatg
atattgggagctgtacttgttgtgggggcagcctttggatggttcgatccaaagagggag
gacgaggacacgccagcgaaaatcagcgcgcggcttcaagggcgaacttcatatgttacg
catcgagctgtgaatccagatgaaaaccgattacccatcgtttcccactcttcaccattt
gttcacaaaggacagaaaggcgatagattagctgaggacggagatttgggaccttccgga
gcgggaaaaccggaacggcctaataccaatatatcatctcaatgcaaatgcagcatcaac
gacatatccgtaatgctgacgaacataccaagcatgcgtggccctccaggacctcagggt
ccaactggggcagatggtactaccggggcacctggaaaaacgggccaaatgggagaacaa
ggaccacctggtccagcaggaccaaaaggtgacagaggagatagaggtgaatccggtatg
ccaggggttgaagggcaacaaggtgcaaagggggagcctggatctgatggtactcctggt
cttcagggcccatctggccctcctgggcctcctggatcgatcactccaacgctaatggaa
tcaacggggttgtacggggctgataggatccttggccctccgggggacagaggtccgatg
ggtctcgcaggtccgcccggcgaaagaggatataccggcaataaaggggagaaaggatta
cacggatccaaaggggacaaaggggaaaggggttatacgggcgcgcgaggcccacacggc
gcgaagggcgaacgcggccaacccagtaaagacgggctgccgggtctcccaggctcccac
ggccggccggcggaaaaaggcgagaaaggtgttcgaggcctacctgggccaccagggcct
tctttgacagcggtttctgaaaattctgttctaggagatcttgcgagaacaggaccacga
gacatcgccaaactcaagggcgataagggagaacgaggcgaaaagggcgaaaaaggaatg
cgtggtattgaaggtccacaaggatttccgggtaacgatggaaaggcgggggaccgcgga
gatattggtccctcaggactccctgggacgcaaggtgcttcagggttaactgggcccaaa
ggtgataaaggagattctggccccccgggtcctgttgccatatctagagaagaagctgtc
attatgacgaagggtgataaaggtgaaccgggacctaggggaaaaagaggtcatcctgga
gctcctggaccaagaggggcgccaggtctacctggtccccctggcattcctggtactaat
ggagtatctggggacattggactgcctgggtggactggtccacctgggattgccggccct
tcgggcactcagggtccaaaaggcgaaaagggggacccgggaattgctttagcggacctt
gaaaagttaaaaggtgataagggtgaacgtggtatagatggaacaccaggtgcagctggg
aaggatgggcccagaggtccacctggacctccaggtacttcttcaaacgttcagtacatc
cctgtaccaggtccacccgggcccccgggaccgccaggaacaagtaacacgaacgaactt
ccattggacactttgacagatagcccgggaattaatcgtcttgaaacaacggcaggaaaa
ccacgtgacgctctgcaaatacttcgaaatttaaataatttgatgcagtatcgacaagga
gcataccatttcgcggaacctttagattcccttagtgaaagtggtgattatgacgacgaa
gaggatggaaggaccataattggaactgtcttattcaaaaccacggattcattattacgg
ttgggtgcaaagaacccccgtggtactctggcatatgtcattcaagagcaagcactgctt
attcgcgtaaacaatggatggcaatatgtttcaatggggtccctgttggctgtacacaac
tcacctggcaacgggcccactcgaacgccgctacagaatattctagaaacttctagttta
gtgcatcacaagagtcccgtgggagaaggcccagtgcttcgtctagctgcgttgaatgaa
cctcacacgggtgacatgcacggagtaagcagcaccaattacgagtgccacagacaagca
cagagagccggcctcgatggcactttccgtgctttcatctcttcaagggtacaaaacata
gattcaatagtgagttgggttgatcgtgaaataccagttgtgaatatacgcggcgacgtg
ctgttcaactcttggggagagatgttcgacggttccggtgcattatttgctcatgcaccg
cgaatttacagttttagcgggaaaaatgtgttgactgaccctggctggacacaaaaagca
gtatggcacggcgcaagtccgaacggtgaaccagcgatggatgcctactgtgacgcatgg
cacagtagcaacccagagaagttcggccttgcctcctcactgcgctccaataaattgcta
gatcaagagacatattcgtgtagctcaaggctgatcgtattatgtattgaagccacgccc
gttgacacagccagaagaaaaaaacgatccaagtatcgcacagacaaattgcattttctg
aaagacatcgaacaacggaacgaaactagaattatatag
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